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Scheduled service maintenance on November 22

On Friday, November 22, 2024, between 06:00 CET and 18:00 CET, GIN services will undergo planned maintenance. Extended service interruptions should be expected. We will try to keep downtimes to a minimum, but recommend that users avoid critical tasks, large data uploads, or DOI requests during this time.

We apologize for any inconvenience.

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OSRfreesurfer
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Дрво: 3655e0ae22
Гране Ознаке
OSRfreesurfer
/
sub-179952
/
scripts
/
recon-all-lh.cmd

recon-all-lh.cmd 2.1 KB
Историја Download

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  1. 

  2. 

  3. #---------------------------------
    4. 

  4. # New invocation of recon-all Thu Jun  4 00:08:51 UTC 2020 
    5. 

  5. #--------------------------------------------
    6. 

  6. #@# Tessellate lh Thu Jun  4 00:08:56 UTC 2020
    7. 

  7. 

  8.  mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz 
    9. 

  9. 

  10. 

  11.  mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix 
    12. 

  12. 

  13. 

  14.  rm -f ../mri/filled-pretess255.mgz 
    15. 

  15. 

  16. 

  17.  mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix 
    18. 

  18. 

  19. #--------------------------------------------
    20. 

  20. #@# Smooth1 lh Thu Jun  4 00:09:29 UTC 2020
    21. 

  21. 

  22.  mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix 
    23. 

  23. 

  24. #--------------------------------------------
    25. 

  25. #@# Inflation1 lh Thu Jun  4 00:09:57 UTC 2020
    26. 

  26. 

  27.  mris_inflate -no-save-sulc -n 50 ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix 
    28. 

  28. 

  29. #--------------------------------------------
    30. 

  30. #@# QSphere lh Thu Jun  4 00:30:31 UTC 2020
    31. 

  31. 

  32.  mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix 
    33. 

  33. 

  34. #--------------------------------------------
    35. 

  35. #@# Fix Topology Copy lh Thu Jun  4 00:47:43 UTC 2020
    36. 

  36. 

  37.  cp ../surf/lh.orig.nofix ../surf/lh.orig 
    38. 

  38. 

  39. 

  40.  cp ../surf/lh.inflated.nofix ../surf/lh.inflated 
    41. 

  41. 

  42. #@# Fix Topology lh Thu Jun  4 00:47:44 UTC 2020
    43. 

  43. 

  44.  mris_fix_topology -rusage /data/project/prepwar/data/OSRtest/freesurfer/sub-179952/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 sub-179952 lh 
    45. 

  45. 

  46. 

  47.  mris_euler_number ../surf/lh.orig 
    48. 

  48. 

  49. 

  50.  mris_remove_intersection ../surf/lh.orig ../surf/lh.orig 
    51. 

  51. 

  52. 

  53.  rm ../surf/lh.inflated 
    54. 

  54. 

  55. #--------------------------------------------
    56. 

  56. #@# Make White Surf lh Thu Jun  4 05:48:03 UTC 2020
    57. 

  57. 

  58.  mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs sub-179952 lh 
    59. 

  59. 

  60. #--------------------------------------------
    61. 

  61. #@# Smooth2 lh Thu Jun  4 07:07:18 UTC 2020
    62. 

  62. 

  63.  mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm 
    64. 

  64. 

  65. #--------------------------------------------
    66. 

  66. #@# Inflation2 lh Thu Jun  4 07:08:41 UTC 2020
    67. 

  67. 

  68.  mris_inflate -rusage /data/project/prepwar/data/OSRtest/freesurfer/sub-179952/touch/rusage.mris_inflate.lh.dat -n 50 ../surf/lh.smoothwm ../surf/lh.inflated 
    69. 

  69.