config_dump_19_05_02.yaml 8.0 KB

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  1. !munch.Munch
  2. session: !munch.Munch
  3. flags: !munch.Munch {stimulus: true, bl: true, decode: false, bl_rand: true}
  4. lfp: !munch.Munch
  5. fs: 1000
  6. sampling_ratio: 30
  7. filter_fc_lb: [10, 0]
  8. filter_fc_mb: [12, 40]
  9. filter_fc_hb: [60, 250]
  10. filter_order_lb: 2
  11. filter_order_mb: 6
  12. filter_order_hb: 10
  13. artifact_thr: 400
  14. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  15. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  16. array21: [0, 1]
  17. array22: []
  18. array1_exclude: []
  19. array2_exclude: []
  20. i_start: 0
  21. i_stop: -1
  22. psth_win: [-1000, 5000]
  23. exclude: false
  24. normalize: false
  25. zscore: false
  26. car: true
  27. sub_band: 1
  28. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  29. spectra: !munch.Munch {spgr_len: 500}
  30. plot: !munch.Munch
  31. ch_ids: [0]
  32. general: true
  33. filters: false
  34. array2: [0, 1]
  35. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  36. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  37. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2020-06-19,
  38. filename_data: /data/clinical/neural/fr/2020-06-19/data_19_05_02.bin, filename_baseline: /data/clinical/neural/fr/2020-06-19/bl_19_05_02.npy,
  39. filename_log_info: /data/clinical/neural/fr/2020-06-19/info_19_05_02.log, filename_log_debug: /data/clinical/neural/fr/2020-06-19/debug_19_05_02.log,
  40. filename_events: /data/clinical/neural/fr/2020-06-19/events_19_05_02.txt, filename_config: /data/clinical/neural/fr/2020-06-19/config_19_05_02.yaml,
  41. filename_paradigm: /data/clinical/neural/fr/2020-06-19/paradigm_19_05_02.yaml, filename_config_dump: /data/clinical/neural/fr/2020-06-19/config_dump_19_05_02.yaml,
  42. filename_git_patch: /data/clinical/neural/fr/2020-06-19/git_changes_19_05_02.patch,
  43. filename_history: /data/clinical/neural/fr/2020-06-19/history.bin, filename_corpus: /data/clinical/neural/fr/2020-06-19/user_corpus_19_05_02.txt,
  44. git_hash: '4413307'}
  45. feedback: !munch.Munch {target_tone_length: 1.0, beta: 120, target_n_tones: 5, tone_length: 0.25,
  46. alpha: 360, hold_iterations: 2, feedback_tone: true}
  47. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/colorspeller.yaml]
  48. paradigms: !munch.Munch
  49. color: !munch.Munch
  50. n_repeat_unclassified: 1
  51. corpora_path: /kiap/data/speller/Corpora
  52. general_user_corpus: general_user_cfd.txt
  53. states:
  54. - - gelb
  55. - [E, A, D, C, B, F, ^]
  56. - - gruen
  57. - [N, S, R, O, M, P, Q, ^]
  58. - - rot
  59. - [I, H, L, G, K, J, ^]
  60. - - blau
  61. - [T, U, W, Z, V, Y, X, ^]
  62. - - weiss
  63. - [<, ' ', <<<, ., end, ^]
  64. init_string: ''
  65. mode: [Validation, Free]
  66. confirmation_num_yes: 2
  67. selected_mode: 1
  68. word_prediction: true
  69. validation_string: ''
  70. selected_opposite_answers_method: 0
  71. confirmation_num_no: 1
  72. opposite_answers_methods: [last, majority]
  73. max_length_vocabulary: 5
  74. audio_path: /kiap/data/speller/Audio
  75. general_corpus: cfd_leipzig.p
  76. speller_user_corpus: speller_user.txt
  77. question: !munch.Munch
  78. mode: [Training, Validation, Free]
  79. selected_mode: 1
  80. audio_path: /kiap/data/speller/Audio/question
  81. number_of_stim: 10
  82. symmetrical: true
  83. training_color: !munch.Munch
  84. mode: [Training]
  85. selected_mode: 0
  86. states:
  87. - - gelb
  88. - [E, A, D, C, B, F, ^]
  89. - - gruen
  90. - [N, S, R, O, M, P, Q, ^]
  91. - - rot
  92. - [I, H, L, G, K, J, ^]
  93. - - blau
  94. - [T, U, W, Z, V, Y, X, ^]
  95. - - weiss
  96. - [<, <<<, ., '?', word, end, ^]
  97. training_string: Gustav
  98. confirmation_yes: 1
  99. confirmation_no: 1
  100. feedback: !munch.Munch
  101. symmetrical: true
  102. number_of_stim: 10
  103. states: !munch.Munch
  104. down: [0.0, 0.0, 0.3]
  105. up: [1.0, 0.7, 1.0]
  106. audio_path: /kiap/data/speller/feedback/
  107. mode: [Training, Validation]
  108. play_end_feedback: !munch.Munch {success: true, fail: true}
  109. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  110. selected_mode: 0
  111. variablesToShowInGUI: !munch.Munch
  112. variableGroups: [timing, color]
  113. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  114. t: 1
  115. exploration: !munch.Munch
  116. mode: [Screening]
  117. selected_mode: 0
  118. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  119. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  120. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  121. audio_path: /kiap/data/speller/Audio/exploration
  122. number_of_stim: 20
  123. buffer: !munch.Munch
  124. length: 600
  125. shape: [600, 128]
  126. daq: !munch.Munch
  127. car_channels: []
  128. normalization: !munch.Munch
  129. do_update: false
  130. len: 600.0
  131. range: [10, 90]
  132. use_all_channels: false
  133. clamp_firing_rates: true
  134. update_interval: 10.0
  135. channels:
  136. - !munch.Munch {id: 105, bottom: 7, top: 15, invert: false}
  137. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  138. n_channels_max: 128
  139. trigger_len: 50
  140. exclude_channels: []
  141. data_source: spike_rates
  142. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  143. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  144. daq_sleep: 0.1
  145. spike_band_power: !munch.Munch
  146. filter: !munch.Munch
  147. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  148. a: [1, -1.91119706742607, 0.914975834801434]
  149. loop_interval: 50
  150. average_n_bins: 10
  151. integrated_samples: 1500
  152. sample_group: 6
  153. smpl_fct: 30
  154. fs: 30000.0
  155. n_channels: 128
  156. system: !munch.Munch {plot: 0}
  157. recording: !munch.Munch
  158. timing: !munch.Munch {t_baseline_rand: 1.0, recording_loop_interval_data: 0.02,
  159. recording_loop_interval: 0.05, t_after_stimulus: 0.2, t_response: 5.0, t_baseline_1: 5.0,
  160. bci_loop_interval: 0.05, decoder_refresh_interval: 0.01, t_baseline_all: 1.0}
  161. plot: !munch.Munch
  162. filter_min_rate: 2
  163. pca: false
  164. channels: [20, 96, 109]
  165. fps: 10.0
  166. general: !munch.Munch {debug: 1, clear_trial_history: false}
  167. speller: !munch.Munch {type: color, pyttsx_rate: 100, audio_result_fb: false, speller_matrix: true,
  168. audio: true}
  169. classifier: !munch.Munch
  170. trigger_pos: start
  171. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  172. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  173. n_classes: 2
  174. thr_prob: 0.8
  175. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  176. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  177. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  178. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  179. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  180. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  181. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  182. n_neg_train: 100000
  183. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  184. args:
  185. - !!python/name:numpy.ndarray ''
  186. - !!python/tuple [0]
  187. - !!binary |
  188. Yg==
  189. state: !!python/tuple
  190. - 1
  191. - !!python/tuple [8]
  192. - !!python/object/apply:numpy.dtype
  193. args: [i8, 0, 1]
  194. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  195. - false
  196. - !!binary |
  197. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  198. AAAAAAAAAA==
  199. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  200. deadtime: 40
  201. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  202. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  203. n_triggers: 2
  204. exclude_data_channels: []
  205. psth: !munch.Munch
  206. cut: [-40, 100]
  207. break_loop: true
  208. online: false
  209. max_active_ch_nr: []
  210. thr_window: 40
  211. include_channels: [20]
  212. saved_model_conf_name: config/model_conf.yaml
  213. n_features: 1024
  214. sim_data: !munch.Munch {rate_bl: 10}