config_dump_16_10_10.yaml 7.8 KB

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  1. !munch.Munch
  2. buffer: !munch.Munch
  3. length: 600
  4. shape: [600, 128]
  5. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  6. lfp: !munch.Munch
  7. fs: 1000
  8. sampling_ratio: 30
  9. filter_fc_lb: [10, 0]
  10. filter_fc_mb: [12, 40]
  11. filter_fc_hb: [60, 250]
  12. filter_order_lb: 2
  13. filter_order_mb: 6
  14. filter_order_hb: 10
  15. artifact_thr: 400
  16. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  17. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  18. array21: [0, 1]
  19. array22: []
  20. array1_exclude: []
  21. array2_exclude: []
  22. i_start: 0
  23. i_stop: -1
  24. psth_win: [-1000, 5000]
  25. exclude: false
  26. normalize: false
  27. zscore: false
  28. car: true
  29. sub_band: 1
  30. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  31. spectra: !munch.Munch {spgr_len: 500}
  32. plot: !munch.Munch
  33. ch_ids: [0]
  34. general: true
  35. filters: false
  36. array2: [0, 1]
  37. plot: !munch.Munch
  38. channels: [20, 24, 96]
  39. filter_min_rate: 2
  40. fps: 10.0
  41. pca: false
  42. paradigms: !munch.Munch
  43. question: !munch.Munch
  44. mode: [Training, Validation, Free]
  45. selected_mode: 2
  46. audio_path: /kiap/data/speller/Audio/question
  47. number_of_stim: 10
  48. symmetrical: true
  49. color: !munch.Munch
  50. max_length_vocabulary: 5
  51. speller_user_corpus: speller_user.txt
  52. audio_path: /kiap/data/speller/Audio
  53. confirmation_methods: [single, double_yes, best_of_three]
  54. general_user_corpus: general_user_cfd.txt
  55. init_string: ''
  56. selected_confirmation_method: 1
  57. selected_mode: 1
  58. validation_string: ''
  59. general_corpus: cfd_tiger.p
  60. word_prediction: false
  61. mode: [Validation, Free]
  62. states:
  63. - - gelb
  64. - [E, A, D, C, B, F, ^]
  65. - - gruen
  66. - [N, S, R, O, M, P, Q, ^]
  67. - - rot
  68. - [I, H, L, G, K, J, ^]
  69. - - blau
  70. - [T, U, W, Z, V, Y, X, ^]
  71. - - weiss
  72. - [<, ' ', end, ^]
  73. corpora_path: /kiap/data/speller/Corpora
  74. n_repeat_unclassified: 1
  75. feedback: !munch.Munch
  76. number_of_stim: 10
  77. audio_path: /kiap/data/speller/feedback/
  78. selected_mode: 0
  79. symmetrical: true
  80. mode: [Training, Validation]
  81. states: !munch.Munch
  82. down: [0.0, 0.0, 0.3]
  83. up: [1.0, 0.7, 1.0]
  84. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  85. play_end_feedback: !munch.Munch {success: true, fail: true}
  86. training_color: !munch.Munch
  87. mode: [Training]
  88. selected_mode: 0
  89. states:
  90. - - gelb
  91. - [E, A, D, C, B, F, ^]
  92. - - gruen
  93. - [N, S, R, O, M, P, Q, ^]
  94. - - rot
  95. - [I, H, L, G, K, J, ^]
  96. - - blau
  97. - [T, U, W, Z, V, Y, X, ^]
  98. - - weiss
  99. - [<, ' ', '?', word, end, ^]
  100. training_string: Gustav
  101. confirmation_yes: 1
  102. confirmation_no: 1
  103. exploration: !munch.Munch
  104. mode: [Screening]
  105. selected_mode: 0
  106. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  107. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  108. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  109. audio_path: /kiap/data/speller/Audio/exploration
  110. number_of_stim: 5
  111. variablesToShowInGUI: !munch.Munch
  112. variableGroups: [timing, color]
  113. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  114. t: 1
  115. recording: !munch.Munch
  116. timing: !munch.Munch {t_baseline_1: 5.0, recording_loop_interval: 0.05, t_baseline_rand: 1.0,
  117. t_response: 5.0, t_baseline_all: 1.0, bci_loop_interval: 0.05, recording_loop_interval_data: 0.02,
  118. t_after_stimulus: 0.2, decoder_refresh_interval: 0.01}
  119. feedback: !munch.Munch {target_n_tones: 5, beta: 120, tone_length: 0.25, alpha: 360,
  120. hold_iterations: 2, target_tone_length: 1.0, feedback_tone: true}
  121. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/colorspeller.yaml]
  122. classifier: !munch.Munch
  123. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  124. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  125. deadtime: 40
  126. n_neg_train: 100000
  127. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  128. include_channels: [20]
  129. max_active_ch_nr: []
  130. thr_window: 40
  131. n_triggers: 2
  132. break_loop: true
  133. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  134. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  135. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  136. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  137. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  138. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  139. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  140. exclude_data_channels: []
  141. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  142. args:
  143. - !!python/name:numpy.ndarray ''
  144. - !!python/tuple [0]
  145. - !!binary |
  146. Yg==
  147. state: !!python/tuple
  148. - 1
  149. - !!python/tuple [8]
  150. - !!python/object/apply:numpy.dtype
  151. args: [i8, 0, 1]
  152. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  153. - false
  154. - !!binary |
  155. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  156. AAAAAAAAAA==
  157. online: false
  158. thr_prob: 0.8
  159. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  160. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  161. trigger_pos: start
  162. n_classes: 2
  163. psth: !munch.Munch
  164. cut: [-40, 100]
  165. saved_model_conf_name: config/model_conf.yaml
  166. n_features: 1024
  167. system: !munch.Munch {plot: 0}
  168. daq: !munch.Munch
  169. trigger_len: 50
  170. data_source: spike_rates
  171. car_channels: []
  172. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  173. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  174. fs: 30000.0
  175. daq_sleep: 0.1
  176. spike_band_power: !munch.Munch
  177. sample_group: 6
  178. average_n_bins: 10
  179. filter: !munch.Munch
  180. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  181. a: [1, -1.91119706742607, 0.914975834801434]
  182. loop_interval: 50
  183. integrated_samples: 1500
  184. smpl_fct: 30
  185. n_channels_max: 128
  186. normalization: !munch.Munch
  187. len: 600.0
  188. use_all_channels: false
  189. do_update: false
  190. range: [10, 90]
  191. channels:
  192. - !munch.Munch {id: 20, bottom: 4.0, top: 11.0, invert: true}
  193. update_interval: 10.0
  194. clamp_firing_rates: true
  195. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  196. exclude_channels: []
  197. n_channels: 128
  198. session: !munch.Munch
  199. flags: !munch.Munch {bl: true, bl_rand: true, stimulus: true, decode: false}
  200. sim_data: !munch.Munch {rate_bl: 10}
  201. speller: !munch.Munch {pyttsx_rate: 100, audio_result_fb: true, speller_matrix: true,
  202. audio: true, type: color}
  203. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  204. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-09-25,
  205. filename_data: /data/clinical/neural/fr/2019-09-25/data_16_10_10.bin, filename_baseline: /data/clinical/neural/fr/2019-09-25/bl_16_10_10.npy,
  206. filename_log_info: /data/clinical/neural/fr/2019-09-25/info_16_10_10.log, filename_log_debug: /data/clinical/neural/fr/2019-09-25/debug_16_10_10.log,
  207. filename_events: /data/clinical/neural/fr/2019-09-25/events_16_10_10.txt, filename_config: /data/clinical/neural/fr/2019-09-25/config_16_10_10.yaml,
  208. filename_paradigm: /data/clinical/neural/fr/2019-09-25/paradigm_16_10_10.yaml, filename_config_dump: /data/clinical/neural/fr/2019-09-25/config_dump_16_10_10.yaml,
  209. filename_git_patch: /data/clinical/neural/fr/2019-09-25/git_changes_16_10_10.patch,
  210. filename_history: /data/clinical/neural/fr/2019-09-25/history.bin, git_hash: 52c204f}
  211. general: !munch.Munch {debug: 1, clear_trial_history: false}