config_dump_17_11_26.yaml 8.0 KB

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  1. !munch.Munch
  2. daq: !munch.Munch
  3. n_channels_max: 128
  4. trigger_len: 50
  5. data_source: spike_rates
  6. spike_band_power: !munch.Munch
  7. filter: !munch.Munch
  8. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  9. a: [1, -1.91119706742607, 0.914975834801434]
  10. integrated_samples: 1500
  11. sample_group: 6
  12. average_n_bins: 10
  13. loop_interval: 50
  14. car_channels: []
  15. normalization: !munch.Munch
  16. len: 600.0
  17. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  18. use_all_channels: false
  19. update_interval: 10.0
  20. range: [10, 90]
  21. clamp_firing_rates: true
  22. channels:
  23. - !munch.Munch {id: 22, bottom: 2, top: 4, invert: false}
  24. do_update: false
  25. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  26. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  27. fs: 30000.0
  28. exclude_channels: []
  29. daq_sleep: 0.1
  30. smpl_fct: 30
  31. n_channels: 128
  32. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  33. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2020-05-15,
  34. filename_data: /data/clinical/neural/fr/2020-05-15/data_17_11_26.bin, filename_baseline: /data/clinical/neural/fr/2020-05-15/bl_17_11_26.npy,
  35. filename_log_info: /data/clinical/neural/fr/2020-05-15/info_17_11_26.log, filename_log_debug: /data/clinical/neural/fr/2020-05-15/debug_17_11_26.log,
  36. filename_events: /data/clinical/neural/fr/2020-05-15/events_17_11_26.txt, filename_config: /data/clinical/neural/fr/2020-05-15/config_17_11_26.yaml,
  37. filename_paradigm: /data/clinical/neural/fr/2020-05-15/paradigm_17_11_26.yaml, filename_config_dump: /data/clinical/neural/fr/2020-05-15/config_dump_17_11_26.yaml,
  38. filename_git_patch: /data/clinical/neural/fr/2020-05-15/git_changes_17_11_26.patch,
  39. filename_history: /data/clinical/neural/fr/2020-05-15/history.bin, filename_corpus: /data/clinical/neural/fr/2020-05-15/user_corpus_17_11_26.txt,
  40. git_hash: 7433eaa}
  41. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  42. lfp: !munch.Munch
  43. fs: 1000
  44. sampling_ratio: 30
  45. filter_fc_lb: [10, 0]
  46. filter_fc_mb: [12, 40]
  47. filter_fc_hb: [60, 250]
  48. filter_order_lb: 2
  49. filter_order_mb: 6
  50. filter_order_hb: 10
  51. artifact_thr: 400
  52. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  53. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  54. array21: [0, 1]
  55. array22: []
  56. array1_exclude: []
  57. array2_exclude: []
  58. i_start: 0
  59. i_stop: -1
  60. psth_win: [-1000, 5000]
  61. exclude: false
  62. normalize: false
  63. zscore: false
  64. car: true
  65. sub_band: 1
  66. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  67. spectra: !munch.Munch {spgr_len: 500}
  68. plot: !munch.Munch
  69. ch_ids: [0]
  70. general: true
  71. filters: false
  72. array2: [0, 1]
  73. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  74. sim_data: !munch.Munch {rate_bl: 10}
  75. session: !munch.Munch
  76. flags: !munch.Munch {bl: true, bl_rand: true, decode: false, stimulus: true}
  77. buffer: !munch.Munch
  78. length: 600
  79. shape: [600, 128]
  80. paradigms: !munch.Munch
  81. question: !munch.Munch
  82. mode: [Training, Validation, Free]
  83. selected_mode: 1
  84. audio_path: /kiap/data/speller/Audio/question
  85. number_of_stim: 10
  86. symmetrical: true
  87. variablesToShowInGUI: !munch.Munch
  88. variableGroups: [timing, color]
  89. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  90. t: 1
  91. color: !munch.Munch
  92. mode: [Validation, Free]
  93. selected_mode: 1
  94. states:
  95. - - gelb
  96. - [E, A, D, C, B, F, ^]
  97. - - gruen
  98. - [N, S, R, O, M, P, Q, ^]
  99. - - rot
  100. - [I, H, L, G, K, J, ^]
  101. - - blau
  102. - [T, U, W, Z, V, Y, X, ^]
  103. - - weiss
  104. - [<, ' ', <<<, ., end, ^]
  105. max_length_vocabulary: 5
  106. confirmation_num_yes: 2
  107. confirmation_num_no: 1
  108. opposite_answers_methods: [last, majority]
  109. selected_opposite_answers_method: 0
  110. corpora_path: /kiap/data/speller/Corpora
  111. audio_path: /kiap/data/speller/Audio
  112. general_corpus: cfd_leipzig.p
  113. general_user_corpus: general_user_cfd.txt
  114. speller_user_corpus: speller_user.txt
  115. word_prediction: true
  116. validation_string: ''
  117. init_string: ''
  118. n_repeat_unclassified: 1
  119. feedback: !munch.Munch
  120. symmetrical: true
  121. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  122. play_end_feedback: !munch.Munch {success: true, fail: true}
  123. number_of_stim: 10
  124. mode: [Training, Validation]
  125. audio_path: /kiap/data/speller/feedback/
  126. states: !munch.Munch
  127. up: [1.0, 0.7, 1.0]
  128. down: [0.0, 0.0, 0.3]
  129. selected_mode: 0
  130. exploration: !munch.Munch
  131. mode: [Screening]
  132. selected_mode: 0
  133. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  134. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  135. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  136. audio_path: /kiap/data/speller/Audio/exploration
  137. number_of_stim: 5
  138. training_color: !munch.Munch
  139. mode: [Training]
  140. selected_mode: 0
  141. states:
  142. - - gelb
  143. - [E, A, D, C, B, F, ^]
  144. - - gruen
  145. - [N, S, R, O, M, P, Q, ^]
  146. - - rot
  147. - [I, H, L, G, K, J, ^]
  148. - - blau
  149. - [T, U, W, Z, V, Y, X, ^]
  150. - - weiss
  151. - [<, <<<, ., '?', word, end, ^]
  152. training_string: Gustav
  153. confirmation_yes: 1
  154. confirmation_no: 1
  155. speller: !munch.Munch {audio_result_fb: false, pyttsx_rate: 100, audio: true, speller_matrix: true,
  156. type: feedback}
  157. feedback: !munch.Munch {target_tone_length: 1.0, beta: 120, alpha: 360, feedback_tone: true,
  158. hold_iterations: 2, target_n_tones: 5, tone_length: 0.25}
  159. plot: !munch.Munch
  160. pca: false
  161. channels: [20, 96, 109]
  162. fps: 10.0
  163. filter_min_rate: 2
  164. classifier: !munch.Munch
  165. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  166. exclude_data_channels: []
  167. trigger_pos: start
  168. include_channels: [20]
  169. n_triggers: 2
  170. psth: !munch.Munch
  171. cut: [-40, 100]
  172. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  173. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  174. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  175. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  176. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  177. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  178. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  179. thr_window: 40
  180. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  181. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  182. saved_model_conf_name: config/model_conf.yaml
  183. max_active_ch_nr: []
  184. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  185. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  186. args:
  187. - !!python/name:numpy.ndarray ''
  188. - !!python/tuple [0]
  189. - !!binary |
  190. Yg==
  191. state: !!python/tuple
  192. - 1
  193. - !!python/tuple [8]
  194. - !!python/object/apply:numpy.dtype
  195. args: [i8, 0, 1]
  196. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  197. - false
  198. - !!binary |
  199. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  200. AAAAAAAAAA==
  201. n_neg_train: 100000
  202. deadtime: 40
  203. online: false
  204. n_classes: 2
  205. thr_prob: 0.8
  206. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  207. break_loop: true
  208. n_features: 1024
  209. general: !munch.Munch {debug: 1, clear_trial_history: false}
  210. system: !munch.Munch {plot: 0}
  211. recording: !munch.Munch
  212. timing: !munch.Munch {recording_loop_interval_data: 0.02, t_baseline_1: 5.0, decoder_refresh_interval: 0.01,
  213. t_response: 5.0, t_after_stimulus: 0.2, t_baseline_rand: 1.0, recording_loop_interval: 0.05,
  214. bci_loop_interval: 0.05, t_baseline_all: 1.0}