config_dump_16_35_02.yaml 8.0 KB

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  1. !munch.Munch
  2. lfp: !munch.Munch
  3. fs: 1000
  4. sampling_ratio: 30
  5. filter_fc_lb: [10, 0]
  6. filter_fc_mb: [12, 40]
  7. filter_fc_hb: [60, 250]
  8. filter_order_lb: 2
  9. filter_order_mb: 6
  10. filter_order_hb: 10
  11. artifact_thr: 400
  12. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  13. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  14. array21: [0, 1]
  15. array22: []
  16. array1_exclude: []
  17. array2_exclude: []
  18. i_start: 0
  19. i_stop: -1
  20. psth_win: [-1000, 5000]
  21. exclude: false
  22. normalize: false
  23. zscore: false
  24. car: true
  25. sub_band: 1
  26. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  27. spectra: !munch.Munch {spgr_len: 500}
  28. plot: !munch.Munch
  29. ch_ids: [0]
  30. general: true
  31. filters: false
  32. array2: [0, 1]
  33. buffer: !munch.Munch
  34. length: 600
  35. shape: [600, 128]
  36. system: !munch.Munch {plot: 0}
  37. recording: !munch.Munch
  38. timing: !munch.Munch {t_baseline_1: 5.0, recording_loop_interval_data: 0.02, decoder_refresh_interval: 0.01,
  39. t_after_stimulus: 0.0, t_response: 5.0, t_baseline_all: 1.0, t_baseline_rand: 1.0,
  40. bci_loop_interval: 0.05, recording_loop_interval: 0.05}
  41. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  42. sim_data: !munch.Munch {rate_bl: 10}
  43. daq: !munch.Munch
  44. data_source: spike_rates
  45. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  46. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  47. trigger_len: 50
  48. daq_sleep: 0.1
  49. n_channels_max: 128
  50. smpl_fct: 30
  51. spike_band_power: !munch.Munch
  52. integrated_samples: 1500
  53. average_n_bins: 10
  54. sample_group: 6
  55. filter: !munch.Munch
  56. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  57. a: [1, -1.91119706742607, 0.914975834801434]
  58. loop_interval: 50
  59. normalization: !munch.Munch
  60. clamp_firing_rates: true
  61. update_interval: 10.0
  62. use_all_channels: false
  63. range: [10, 90]
  64. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  65. do_update: false
  66. len: 600.0
  67. channels:
  68. - !munch.Munch {id: 17, bottom: 2, top: 4.5, invert: true}
  69. car_channels: []
  70. exclude_channels: []
  71. fs: 30000.0
  72. n_channels: 128
  73. speller: !munch.Munch {type: feedback, audio: true, speller_matrix: true, pyttsx_rate: 100,
  74. audio_result_fb: false}
  75. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback_wo_reward.yaml]
  76. general: !munch.Munch {debug: 1, clear_trial_history: false}
  77. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  78. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2020-05-15,
  79. filename_data: /data/clinical/neural/fr/2020-05-15/data_16_35_02.bin, filename_baseline: /data/clinical/neural/fr/2020-05-15/bl_16_35_02.npy,
  80. filename_log_info: /data/clinical/neural/fr/2020-05-15/info_16_35_02.log, filename_log_debug: /data/clinical/neural/fr/2020-05-15/debug_16_35_02.log,
  81. filename_events: /data/clinical/neural/fr/2020-05-15/events_16_35_02.txt, filename_config: /data/clinical/neural/fr/2020-05-15/config_16_35_02.yaml,
  82. filename_paradigm: /data/clinical/neural/fr/2020-05-15/paradigm_16_35_02.yaml, filename_config_dump: /data/clinical/neural/fr/2020-05-15/config_dump_16_35_02.yaml,
  83. filename_git_patch: /data/clinical/neural/fr/2020-05-15/git_changes_16_35_02.patch,
  84. filename_history: /data/clinical/neural/fr/2020-05-15/history.bin, filename_corpus: /data/clinical/neural/fr/2020-05-15/user_corpus_16_35_02.txt,
  85. git_hash: 7433eaa}
  86. paradigms: !munch.Munch
  87. variablesToShowInGUI: !munch.Munch
  88. variableGroups: [timing, color]
  89. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  90. t: 1
  91. question: !munch.Munch
  92. mode: [Training, Validation, Free]
  93. selected_mode: 1
  94. audio_path: /kiap/data/speller/Audio/question
  95. number_of_stim: 10
  96. symmetrical: true
  97. feedback: !munch.Munch
  98. states: !munch.Munch
  99. up: [1.0, 0.7, 1.0]
  100. down: [0.0, 0.0, 0.3]
  101. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  102. play_end_feedback: !munch.Munch {success: false, fail: false}
  103. selected_mode: 0
  104. mode: [Training, Validation]
  105. audio_path: /kiap/data/speller/feedback/
  106. symmetrical: true
  107. number_of_stim: 10
  108. color: !munch.Munch
  109. mode: [Validation, Free]
  110. selected_mode: 1
  111. states:
  112. - - gelb
  113. - [E, A, D, C, B, F, ^]
  114. - - gruen
  115. - [N, S, R, O, M, P, Q, ^]
  116. - - rot
  117. - [I, H, L, G, K, J, ^]
  118. - - blau
  119. - [T, U, W, Z, V, Y, X, ^]
  120. - - weiss
  121. - [<, ' ', <<<, ., end, ^]
  122. max_length_vocabulary: 5
  123. confirmation_num_yes: 2
  124. confirmation_num_no: 1
  125. opposite_answers_methods: [last, majority]
  126. selected_opposite_answers_method: 0
  127. corpora_path: /kiap/data/speller/Corpora
  128. audio_path: /kiap/data/speller/Audio
  129. general_corpus: cfd_leipzig.p
  130. general_user_corpus: general_user_cfd.txt
  131. speller_user_corpus: speller_user.txt
  132. word_prediction: true
  133. validation_string: ''
  134. init_string: ''
  135. n_repeat_unclassified: 1
  136. training_color: !munch.Munch
  137. mode: [Training]
  138. selected_mode: 0
  139. states:
  140. - - gelb
  141. - [E, A, D, C, B, F, ^]
  142. - - gruen
  143. - [N, S, R, O, M, P, Q, ^]
  144. - - rot
  145. - [I, H, L, G, K, J, ^]
  146. - - blau
  147. - [T, U, W, Z, V, Y, X, ^]
  148. - - weiss
  149. - [<, <<<, ., '?', word, end, ^]
  150. training_string: Gustav
  151. confirmation_yes: 1
  152. confirmation_no: 1
  153. exploration: !munch.Munch
  154. mode: [Screening]
  155. selected_mode: 0
  156. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  157. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  158. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  159. audio_path: /kiap/data/speller/Audio/exploration
  160. number_of_stim: 5
  161. feedback: !munch.Munch {target_n_tones: 5, beta: 120, target_tone_length: 1.0, feedback_tone: true,
  162. tone_length: 0.25, hold_iterations: 2, alpha: 360}
  163. session: !munch.Munch
  164. flags: !munch.Munch {decode: false, stimulus: true, bl_rand: false, bl: true}
  165. classifier: !munch.Munch
  166. max_active_ch_nr: []
  167. break_loop: true
  168. thr_prob: 0.8
  169. trigger_pos: start
  170. exclude_data_channels: []
  171. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  172. online: false
  173. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  174. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  175. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  176. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  177. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  178. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  179. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  180. n_triggers: 2
  181. psth: !munch.Munch
  182. cut: [-40, 100]
  183. deadtime: 40
  184. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  185. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  186. n_classes: 2
  187. thr_window: 40
  188. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  189. saved_model_conf_name: config/model_conf.yaml
  190. n_neg_train: 100000
  191. include_channels: [20]
  192. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  193. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  194. args:
  195. - !!python/name:numpy.ndarray ''
  196. - !!python/tuple [0]
  197. - !!binary |
  198. Yg==
  199. state: !!python/tuple
  200. - 1
  201. - !!python/tuple [8]
  202. - !!python/object/apply:numpy.dtype
  203. args: [i8, 0, 1]
  204. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  205. - false
  206. - !!binary |
  207. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  208. AAAAAAAAAA==
  209. n_features: 1024
  210. plot: !munch.Munch
  211. filter_min_rate: 2
  212. fps: 10.0
  213. channels: [20, 96, 109]
  214. pca: false