config_dump_15_47_53.yaml 7.8 KB

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  1. !munch.Munch
  2. recording: !munch.Munch
  3. timing: !munch.Munch {t_after_stimulus: 0.5, t_baseline_all: 1.0, recording_loop_interval: 0.05,
  4. t_baseline_1: 5.0, decoder_refresh_interval: 0.01, t_baseline_rand: 1.0, bci_loop_interval: 0.05,
  5. t_response: 5.0, recording_loop_interval_data: 0.02}
  6. paradigms: !munch.Munch
  7. color: !munch.Munch
  8. mode: [Validation, Free]
  9. selected_mode: 1
  10. states:
  11. - - gelb
  12. - [E, A, D, C, B, F, ^]
  13. - - gruen
  14. - [N, S, R, O, M, P, Q, ^]
  15. - - rot
  16. - [I, H, L, G, K, J, ^]
  17. - - blau
  18. - [T, U, W, Z, V, Y, X, ^]
  19. - - weiss
  20. - [<, ' ', end, ^]
  21. max_length_vocabulary: 5
  22. confirmation_methods: [single, double_yes, best_of_three]
  23. selected_confirmation_method: 1
  24. corpora_path: /kiap/data/speller/Corpora
  25. audio_path: /kiap/data/speller/Audio
  26. general_corpus: cfd_tiger.p
  27. general_user_corpus: general_user_cfd.txt
  28. speller_user_corpus: speller_user.txt
  29. word_prediction: false
  30. validation_string: ''
  31. init_string: ''
  32. n_repeat_unclassified: 1
  33. exploration: !munch.Munch
  34. mode: [Screening]
  35. selected_mode: 0
  36. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  37. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  38. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  39. audio_path: /kiap/data/speller/Audio/exploration
  40. number_of_stim: 5
  41. training_color: !munch.Munch
  42. mode: [Training]
  43. selected_mode: 0
  44. states:
  45. - - gelb
  46. - [E, A, D, C, B, F, ^]
  47. - - gruen
  48. - [N, S, R, O, M, P, Q, ^]
  49. - - rot
  50. - [I, H, L, G, K, J, ^]
  51. - - blau
  52. - [T, U, W, Z, V, Y, X, ^]
  53. - - weiss
  54. - [<, ' ', '?', word, end, ^]
  55. training_string: Gustav
  56. confirmation_yes: 1
  57. confirmation_no: 1
  58. question: !munch.Munch
  59. mode: [Training, Validation, Free]
  60. selected_mode: 2
  61. audio_path: /kiap/data/speller/Audio/question
  62. number_of_stim: 10
  63. symmetrical: true
  64. feedback: !munch.Munch
  65. mode: [Training, Validation]
  66. play_end_feedback: !munch.Munch {success: true, fail: true}
  67. selected_mode: 0
  68. symmetrical: true
  69. audio_path: /kiap/data/speller/feedback/
  70. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  71. number_of_stim: 10
  72. states: !munch.Munch
  73. up: [1.0, 0.7, 1.0]
  74. down: [0.0, 0.0, 0.3]
  75. variablesToShowInGUI: !munch.Munch
  76. variableGroups: [timing, color]
  77. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  78. t: 1
  79. session: !munch.Munch
  80. flags: !munch.Munch {bl_rand: true, stimulus: true, decode: false, bl: true}
  81. speller: !munch.Munch {pyttsx_rate: 100, audio_result_fb: true, speller_matrix: true,
  82. audio: true, type: feedback}
  83. classifier: !munch.Munch
  84. thr_window: 40
  85. saved_model_conf_name: config/model_conf.yaml
  86. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  87. deadtime: 40
  88. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  89. args:
  90. - !!python/name:numpy.ndarray ''
  91. - !!python/tuple [0]
  92. - !!binary |
  93. Yg==
  94. state: !!python/tuple
  95. - 1
  96. - !!python/tuple [8]
  97. - !!python/object/apply:numpy.dtype
  98. args: [i8, 0, 1]
  99. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  100. - false
  101. - !!binary |
  102. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  103. AAAAAAAAAA==
  104. online: false
  105. n_triggers: 2
  106. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  107. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  108. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  109. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  110. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  111. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  112. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  113. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  114. exclude_data_channels: []
  115. thr_prob: 0.8
  116. break_loop: true
  117. n_neg_train: 100000
  118. max_active_ch_nr: []
  119. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  120. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  121. trigger_pos: start
  122. psth: !munch.Munch
  123. cut: [-40, 100]
  124. n_classes: 2
  125. include_channels: [20]
  126. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  127. n_features: 1024
  128. daq: !munch.Munch
  129. trigger_len: 50
  130. fs: 30000.0
  131. n_channels_max: 128
  132. daq_sleep: 0.1
  133. car_channels: []
  134. normalization: !munch.Munch
  135. range: [10, 90]
  136. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  137. update_interval: 10.0
  138. use_all_channels: false
  139. clamp_firing_rates: true
  140. channels:
  141. - !munch.Munch {id: 20, bottom: 1.5, top: 6.0, invert: true}
  142. len: 600.0
  143. do_update: false
  144. data_source: spike_rates
  145. smpl_fct: 30
  146. spike_band_power: !munch.Munch
  147. average_n_bins: 10
  148. filter: !munch.Munch
  149. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  150. a: [1, -1.91119706742607, 0.914975834801434]
  151. sample_group: 6
  152. integrated_samples: 1500
  153. loop_interval: 50
  154. exclude_channels: []
  155. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  156. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  157. n_channels: 128
  158. sim_data: !munch.Munch {rate_bl: 10}
  159. feedback: !munch.Munch {beta: 120, target_tone_length: 1.0, target_n_tones: 5, tone_length: 0.25,
  160. alpha: 360, feedback_tone: true, hold_iterations: 2}
  161. lfp: !munch.Munch
  162. fs: 1000
  163. sampling_ratio: 30
  164. filter_fc_lb: [10, 0]
  165. filter_fc_mb: [12, 40]
  166. filter_fc_hb: [60, 250]
  167. filter_order_lb: 2
  168. filter_order_mb: 6
  169. filter_order_hb: 10
  170. artifact_thr: 400
  171. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  172. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  173. array21: [0, 1]
  174. array22: []
  175. array1_exclude: []
  176. array2_exclude: []
  177. i_start: 0
  178. i_stop: -1
  179. psth_win: [-1000, 5000]
  180. exclude: false
  181. normalize: false
  182. zscore: false
  183. car: true
  184. sub_band: 1
  185. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  186. spectra: !munch.Munch {spgr_len: 500}
  187. plot: !munch.Munch
  188. ch_ids: [0]
  189. general: true
  190. filters: false
  191. array2: [0, 1]
  192. system: !munch.Munch {plot: 0}
  193. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  194. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  195. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2020-01-15,
  196. filename_data: /data/clinical/neural/fr/2020-01-15/data_15_47_53.bin, filename_baseline: /data/clinical/neural/fr/2020-01-15/bl_15_47_53.npy,
  197. filename_log_info: /data/clinical/neural/fr/2020-01-15/info_15_47_53.log, filename_log_debug: /data/clinical/neural/fr/2020-01-15/debug_15_47_53.log,
  198. filename_events: /data/clinical/neural/fr/2020-01-15/events_15_47_53.txt, filename_config: /data/clinical/neural/fr/2020-01-15/config_15_47_53.yaml,
  199. filename_paradigm: /data/clinical/neural/fr/2020-01-15/paradigm_15_47_53.yaml, filename_config_dump: /data/clinical/neural/fr/2020-01-15/config_dump_15_47_53.yaml,
  200. filename_git_patch: /data/clinical/neural/fr/2020-01-15/git_changes_15_47_53.patch,
  201. filename_history: /data/clinical/neural/fr/2020-01-15/history.bin, git_hash: 52c204f}
  202. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  203. general: !munch.Munch {debug: 1, clear_trial_history: false}
  204. buffer: !munch.Munch
  205. length: 600
  206. shape: [600, 128]
  207. plot: !munch.Munch
  208. filter_min_rate: 2
  209. channels: [96, 98]
  210. pca: false
  211. fps: 10.0