config_dump_13_06_56.yaml 7.9 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211
  1. !munch.Munch
  2. plot: !munch.Munch
  3. pca: false
  4. channels: [96, 98]
  5. filter_min_rate: 2
  6. fps: 10.0
  7. feedback: !munch.Munch {alpha: 360, beta: 120, tone_length: 0.25, target_tone_length: 1.0,
  8. hold_iterations: 2, feedback_tone: true, target_n_tones: 5}
  9. lfp: !munch.Munch
  10. fs: 1000
  11. sampling_ratio: 30
  12. filter_fc_lb: [10, 0]
  13. filter_fc_mb: [12, 40]
  14. filter_fc_hb: [60, 250]
  15. filter_order_lb: 2
  16. filter_order_mb: 6
  17. filter_order_hb: 10
  18. artifact_thr: 400
  19. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  20. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  21. array21: [0, 1]
  22. array22: []
  23. array1_exclude: []
  24. array2_exclude: []
  25. i_start: 0
  26. i_stop: -1
  27. psth_win: [-1000, 5000]
  28. exclude: false
  29. normalize: false
  30. zscore: false
  31. car: true
  32. sub_band: 1
  33. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  34. spectra: !munch.Munch {spgr_len: 500}
  35. plot: !munch.Munch
  36. ch_ids: [0]
  37. general: true
  38. filters: false
  39. array2: [0, 1]
  40. speller: !munch.Munch {audio: true, type: feedback, audio_result_fb: true, speller_matrix: true,
  41. pyttsx_rate: 100}
  42. buffer: !munch.Munch
  43. length: 600
  44. shape: [600, 128]
  45. sim_data: !munch.Munch {rate_bl: 10}
  46. classifier: !munch.Munch
  47. n_triggers: 2
  48. n_neg_train: 100000
  49. deadtime: 40
  50. exclude_data_channels: []
  51. max_active_ch_nr: []
  52. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  53. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  54. thr_prob: 0.8
  55. online: false
  56. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  57. args:
  58. - !!python/name:numpy.ndarray ''
  59. - !!python/tuple [0]
  60. - !!binary |
  61. Yg==
  62. state: !!python/tuple
  63. - 1
  64. - !!python/tuple [8]
  65. - !!python/object/apply:numpy.dtype
  66. args: [i8, 0, 1]
  67. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  68. - false
  69. - !!binary |
  70. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  71. AAAAAAAAAA==
  72. break_loop: true
  73. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  74. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  75. saved_model_conf_name: config/model_conf.yaml
  76. n_classes: 2
  77. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  78. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  79. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  80. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  81. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  82. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  83. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  84. trigger_pos: start
  85. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  86. thr_window: 40
  87. include_channels: [20]
  88. psth: !munch.Munch
  89. cut: [-40, 100]
  90. n_features: 1024
  91. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback_wo_reward.yaml]
  92. paradigms: !munch.Munch
  93. feedback: !munch.Munch
  94. states: !munch.Munch
  95. down: [0.0, 0.0, 0.3]
  96. up: [1.0, 0.7, 1.0]
  97. play_end_feedback: !munch.Munch {fail: false, success: false}
  98. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  99. selected_mode: 0
  100. audio_path: /kiap/data/speller/feedback/
  101. number_of_stim: 10
  102. symmetrical: true
  103. mode: [Training, Validation]
  104. question: !munch.Munch
  105. mode: [Training, Validation, Free]
  106. selected_mode: 2
  107. audio_path: /kiap/data/speller/Audio/question
  108. number_of_stim: 10
  109. symmetrical: true
  110. exploration: !munch.Munch
  111. mode: [Screening]
  112. selected_mode: 0
  113. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  114. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  115. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  116. audio_path: /kiap/data/speller/Audio/exploration
  117. number_of_stim: 5
  118. training_color: !munch.Munch
  119. mode: [Training]
  120. selected_mode: 0
  121. states:
  122. - - gelb
  123. - [E, A, D, C, B, F, ^]
  124. - - gruen
  125. - [N, S, R, O, M, P, Q, ^]
  126. - - rot
  127. - [I, H, L, G, K, J, ^]
  128. - - blau
  129. - [T, U, W, Z, V, Y, X, ^]
  130. - - weiss
  131. - [<, ' ', '?', word, end, ^]
  132. training_string: Gustav
  133. confirmation_yes: 1
  134. confirmation_no: 1
  135. color: !munch.Munch
  136. mode: [Validation, Free]
  137. selected_mode: 1
  138. states:
  139. - - gelb
  140. - [E, A, D, C, B, F, ^]
  141. - - gruen
  142. - [N, S, R, O, M, P, Q, ^]
  143. - - rot
  144. - [I, H, L, G, K, J, ^]
  145. - - blau
  146. - [T, U, W, Z, V, Y, X, ^]
  147. - - weiss
  148. - [<, ' ', end, ^]
  149. max_length_vocabulary: 5
  150. confirmation_methods: [single, double_yes, best_of_three]
  151. selected_confirmation_method: 1
  152. corpora_path: /kiap/data/speller/Corpora
  153. audio_path: /kiap/data/speller/Audio
  154. general_corpus: cfd_tiger.p
  155. general_user_corpus: general_user_cfd.txt
  156. speller_user_corpus: speller_user.txt
  157. word_prediction: false
  158. validation_string: ''
  159. init_string: ''
  160. n_repeat_unclassified: 1
  161. variablesToShowInGUI: !munch.Munch
  162. variableGroups: [timing, color]
  163. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  164. t: 1
  165. general: !munch.Munch {debug: 1, clear_trial_history: false}
  166. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  167. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-12-25,
  168. filename_data: /data/clinical/neural/fr/2019-12-25/data_13_06_56.bin, filename_baseline: /data/clinical/neural/fr/2019-12-25/bl_13_06_56.npy,
  169. filename_log_info: /data/clinical/neural/fr/2019-12-25/info_13_06_56.log, filename_log_debug: /data/clinical/neural/fr/2019-12-25/debug_13_06_56.log,
  170. filename_events: /data/clinical/neural/fr/2019-12-25/events_13_06_56.txt, filename_config: /data/clinical/neural/fr/2019-12-25/config_13_06_56.yaml,
  171. filename_paradigm: /data/clinical/neural/fr/2019-12-25/paradigm_13_06_56.yaml, filename_config_dump: /data/clinical/neural/fr/2019-12-25/config_dump_13_06_56.yaml,
  172. filename_git_patch: /data/clinical/neural/fr/2019-12-25/git_changes_13_06_56.patch,
  173. filename_history: /data/clinical/neural/fr/2019-12-25/history.bin, git_hash: 52c204f}
  174. daq: !munch.Munch
  175. spike_band_power: !munch.Munch
  176. sample_group: 6
  177. average_n_bins: 10
  178. integrated_samples: 1500
  179. filter: !munch.Munch
  180. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  181. a: [1, -1.91119706742607, 0.914975834801434]
  182. loop_interval: 50
  183. exclude_channels: []
  184. trigger_len: 50
  185. data_source: spike_rates
  186. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  187. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  188. smpl_fct: 30
  189. fs: 30000.0
  190. n_channels_max: 128
  191. car_channels: []
  192. normalization: !munch.Munch
  193. channels:
  194. - !munch.Munch {id: 12, bottom: 1.0, top: 4.0, invert: false}
  195. len: 600.0
  196. range: [10, 90]
  197. do_update: false
  198. clamp_firing_rates: true
  199. use_all_channels: false
  200. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  201. update_interval: 10.0
  202. daq_sleep: 0.1
  203. n_channels: 128
  204. system: !munch.Munch {plot: 0}
  205. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  206. recording: !munch.Munch
  207. timing: !munch.Munch {recording_loop_interval: 0.05, t_after_stimulus: 0.0, t_baseline_all: 1.0,
  208. recording_loop_interval_data: 0.02, bci_loop_interval: 0.05, t_baseline_rand: 1.0,
  209. decoder_refresh_interval: 0.01, t_baseline_1: 5.0, t_response: 5.0}
  210. session: !munch.Munch
  211. flags: !munch.Munch {bl_rand: false, stimulus: true, bl: true, decode: false}