config_dump_14_56_00.yaml 7.9 KB

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  1. !munch.Munch
  2. general: !munch.Munch {debug: 1, clear_trial_history: false}
  3. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  4. buffer: !munch.Munch
  5. length: 600
  6. shape: [600, 128]
  7. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  8. plot: !munch.Munch
  9. filter_min_rate: 2
  10. channels: [20, 21, 17, 98, 112]
  11. pca: false
  12. fps: 10.0
  13. sim_data: !munch.Munch {rate_bl: 10}
  14. lfp: !munch.Munch
  15. fs: 1000
  16. sampling_ratio: 30
  17. filter_fc_lb: [10, 0]
  18. filter_fc_mb: [12, 40]
  19. filter_fc_hb: [60, 250]
  20. filter_order_lb: 2
  21. filter_order_mb: 6
  22. filter_order_hb: 10
  23. artifact_thr: 400
  24. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  25. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  26. array21: [0, 1]
  27. array22: []
  28. array1_exclude: []
  29. array2_exclude: []
  30. i_start: 0
  31. i_stop: -1
  32. psth_win: [-1000, 5000]
  33. exclude: false
  34. normalize: false
  35. zscore: false
  36. car: true
  37. sub_band: 1
  38. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  39. spectra: !munch.Munch {spgr_len: 500}
  40. plot: !munch.Munch
  41. ch_ids: [0]
  42. general: true
  43. filters: false
  44. array2: [0, 1]
  45. recording: !munch.Munch
  46. timing: !munch.Munch {bci_loop_interval: 0.05, recording_loop_interval: 0.05, t_response: 5.0,
  47. recording_loop_interval_data: 0.02, t_baseline_all: 1.0, t_baseline_rand: 1.0,
  48. t_after_stimulus: 0.5, decoder_refresh_interval: 0.01, t_baseline_1: 5.0}
  49. daq: !munch.Munch
  50. exclude_channels: []
  51. n_channels_max: 128
  52. car_channels: []
  53. trigger_len: 50
  54. fs: 30000.0
  55. normalization: !munch.Munch
  56. channels:
  57. - !munch.Munch {id: 17, bottom: 2.0, top: 10.0, invert: false}
  58. - !munch.Munch {id: 21, bottom: 2.0, top: 8.0, invert: false}
  59. do_update: false
  60. use_all_channels: false
  61. update_interval: 10.0
  62. clamp_firing_rates: true
  63. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  64. range: [10, 90]
  65. len: 600.0
  66. spike_band_power: !munch.Munch
  67. sample_group: 6
  68. filter: !munch.Munch
  69. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  70. a: [1, -1.91119706742607, 0.914975834801434]
  71. integrated_samples: 1500
  72. average_n_bins: 10
  73. loop_interval: 50
  74. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  75. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  76. smpl_fct: 30
  77. data_source: spike_rates
  78. daq_sleep: 0.1
  79. n_channels: 128
  80. paradigms: !munch.Munch
  81. exploration: !munch.Munch
  82. mode: [Screening]
  83. selected_mode: 0
  84. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  85. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  86. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  87. audio_path: /kiap/data/speller/Audio/exploration
  88. number_of_stim: 5
  89. variablesToShowInGUI: !munch.Munch
  90. variableGroups: [timing, color]
  91. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  92. t: 1
  93. feedback: !munch.Munch
  94. states: !munch.Munch
  95. down: [0.0, 0.0, 0.3]
  96. up: [1.0, 0.7, 1.0]
  97. symmetrical: true
  98. number_of_stim: 10
  99. audio_path: /kiap/data/speller/feedback/
  100. mode: [Training, Validation]
  101. play_end_feedback: !munch.Munch {fail: true, success: true}
  102. selected_mode: 0
  103. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  104. training_color: !munch.Munch
  105. mode: [Training]
  106. selected_mode: 0
  107. states:
  108. - - gelb
  109. - [E, A, D, C, B, F, ^]
  110. - - gruen
  111. - [N, S, R, O, M, P, Q, ^]
  112. - - rot
  113. - [I, H, L, G, K, J, ^]
  114. - - blau
  115. - [T, U, W, Z, V, Y, X, ^]
  116. - - weiss
  117. - [<, ' ', '?', word, end, ^]
  118. training_string: Gustav
  119. confirmation_yes: 1
  120. confirmation_no: 1
  121. question: !munch.Munch
  122. mode: [Training, Validation, Free]
  123. selected_mode: 2
  124. audio_path: /kiap/data/speller/Audio/question
  125. number_of_stim: 10
  126. symmetrical: true
  127. color: !munch.Munch
  128. mode: [Validation, Free]
  129. selected_mode: 1
  130. states:
  131. - - gelb
  132. - [E, A, D, C, B, F, ^]
  133. - - gruen
  134. - [N, S, R, O, M, P, Q, ^]
  135. - - rot
  136. - [I, H, L, G, K, J, ^]
  137. - - blau
  138. - [T, U, W, Z, V, Y, X, ^]
  139. - - weiss
  140. - [<, ' ', end, ^]
  141. max_length_vocabulary: 5
  142. confirmation_methods: [single, double_yes, best_of_three]
  143. selected_confirmation_method: 0
  144. corpora_path: /kiap/data/speller/Corpora
  145. audio_path: /kiap/data/speller/Audio
  146. general_corpus: cfd_tiger.p
  147. general_user_corpus: general_user_cfd.txt
  148. speller_user_corpus: speller_user.txt
  149. word_prediction: false
  150. validation_string: ''
  151. init_string: ''
  152. n_repeat_unclassified: 1
  153. session: !munch.Munch
  154. flags: !munch.Munch {decode: false, bl_rand: true, stimulus: true, bl: true}
  155. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  156. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-11-28,
  157. filename_data: /data/clinical/neural/fr/2019-11-28/data_14_56_00.bin, filename_baseline: /data/clinical/neural/fr/2019-11-28/bl_14_56_00.npy,
  158. filename_log_info: /data/clinical/neural/fr/2019-11-28/info_14_56_00.log, filename_log_debug: /data/clinical/neural/fr/2019-11-28/debug_14_56_00.log,
  159. filename_events: /data/clinical/neural/fr/2019-11-28/events_14_56_00.txt, filename_config: /data/clinical/neural/fr/2019-11-28/config_14_56_00.yaml,
  160. filename_paradigm: /data/clinical/neural/fr/2019-11-28/paradigm_14_56_00.yaml, filename_config_dump: /data/clinical/neural/fr/2019-11-28/config_dump_14_56_00.yaml,
  161. filename_git_patch: /data/clinical/neural/fr/2019-11-28/git_changes_14_56_00.patch,
  162. filename_history: /data/clinical/neural/fr/2019-11-28/history.bin, git_hash: 52c204f}
  163. feedback: !munch.Munch {tone_length: 0.25, feedback_tone: true, beta: 120, alpha: 360,
  164. target_n_tones: 5, target_tone_length: 1.0, hold_iterations: 2}
  165. classifier: !munch.Munch
  166. exclude_data_channels: []
  167. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  168. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  169. args:
  170. - !!python/name:numpy.ndarray ''
  171. - !!python/tuple [0]
  172. - !!binary |
  173. Yg==
  174. state: !!python/tuple
  175. - 1
  176. - !!python/tuple [8]
  177. - !!python/object/apply:numpy.dtype
  178. args: [i8, 0, 1]
  179. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  180. - false
  181. - !!binary |
  182. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  183. AAAAAAAAAA==
  184. thr_window: 40
  185. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  186. break_loop: true
  187. deadtime: 40
  188. saved_model_conf_name: config/model_conf.yaml
  189. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  190. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  191. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  192. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  193. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  194. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  195. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  196. psth: !munch.Munch
  197. cut: [-40, 100]
  198. include_channels: [20]
  199. n_neg_train: 100000
  200. n_triggers: 2
  201. online: false
  202. trigger_pos: start
  203. max_active_ch_nr: []
  204. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  205. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  206. n_classes: 2
  207. thr_prob: 0.8
  208. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  209. n_features: 1024
  210. speller: !munch.Munch {pyttsx_rate: 100, audio: true, audio_result_fb: true, type: feedback,
  211. speller_matrix: true}
  212. system: !munch.Munch {plot: 0}