config_dump_14_15_16.yaml 7.8 KB

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  1. !munch.Munch
  2. plot: !munch.Munch
  3. fps: 10.0
  4. pca: false
  5. channels: [20, 24, 96]
  6. filter_min_rate: 2
  7. sim_data: !munch.Munch {rate_bl: 10}
  8. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  9. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-10-08,
  10. filename_data: /data/clinical/neural/fr/2019-10-08/data_14_15_16.bin, filename_baseline: /data/clinical/neural/fr/2019-10-08/bl_14_15_16.npy,
  11. filename_log_info: /data/clinical/neural/fr/2019-10-08/info_14_15_16.log, filename_log_debug: /data/clinical/neural/fr/2019-10-08/debug_14_15_16.log,
  12. filename_events: /data/clinical/neural/fr/2019-10-08/events_14_15_16.txt, filename_config: /data/clinical/neural/fr/2019-10-08/config_14_15_16.yaml,
  13. filename_paradigm: /data/clinical/neural/fr/2019-10-08/paradigm_14_15_16.yaml, filename_config_dump: /data/clinical/neural/fr/2019-10-08/config_dump_14_15_16.yaml,
  14. filename_git_patch: /data/clinical/neural/fr/2019-10-08/git_changes_14_15_16.patch,
  15. filename_history: /data/clinical/neural/fr/2019-10-08/history.bin, git_hash: 52c204f}
  16. daq: !munch.Munch
  17. car_channels: []
  18. smpl_fct: 30
  19. fs: 30000.0
  20. daq_sleep: 0.1
  21. spike_band_power: !munch.Munch
  22. average_n_bins: 10
  23. loop_interval: 50
  24. sample_group: 6
  25. filter: !munch.Munch
  26. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  27. a: [1, -1.91119706742607, 0.914975834801434]
  28. integrated_samples: 1500
  29. data_source: spike_rates
  30. trigger_len: 50
  31. normalization: !munch.Munch
  32. use_all_channels: false
  33. len: 600.0
  34. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  35. range: [10, 90]
  36. do_update: false
  37. clamp_firing_rates: true
  38. channels:
  39. - !munch.Munch {id: 20, bottom: 10.0, top: 25.0, invert: true}
  40. update_interval: 10.0
  41. n_channels_max: 128
  42. exclude_channels: []
  43. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  44. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  45. n_channels: 128
  46. paradigms: !munch.Munch
  47. training_color: !munch.Munch
  48. mode: [Training]
  49. selected_mode: 0
  50. states:
  51. - - gelb
  52. - [E, A, D, C, B, F, ^]
  53. - - gruen
  54. - [N, S, R, O, M, P, Q, ^]
  55. - - rot
  56. - [I, H, L, G, K, J, ^]
  57. - - blau
  58. - [T, U, W, Z, V, Y, X, ^]
  59. - - weiss
  60. - [<, ' ', '?', word, end, ^]
  61. training_string: Gustav
  62. confirmation_yes: 1
  63. confirmation_no: 1
  64. question: !munch.Munch
  65. mode: [Training, Validation, Free]
  66. selected_mode: 2
  67. audio_path: /kiap/data/speller/Audio/question
  68. number_of_stim: 10
  69. symmetrical: true
  70. color: !munch.Munch
  71. mode: [Validation, Free]
  72. selected_mode: 1
  73. states:
  74. - - gelb
  75. - [E, A, D, C, B, F, ^]
  76. - - gruen
  77. - [N, S, R, O, M, P, Q, ^]
  78. - - rot
  79. - [I, H, L, G, K, J, ^]
  80. - - blau
  81. - [T, U, W, Z, V, Y, X, ^]
  82. - - weiss
  83. - [<, ' ', end, ^]
  84. max_length_vocabulary: 5
  85. confirmation_methods: [single, double_yes, best_of_three]
  86. selected_confirmation_method: 1
  87. corpora_path: /kiap/data/speller/Corpora
  88. audio_path: /kiap/data/speller/Audio
  89. general_corpus: cfd_tiger.p
  90. general_user_corpus: general_user_cfd.txt
  91. speller_user_corpus: speller_user.txt
  92. word_prediction: false
  93. validation_string: ''
  94. init_string: ''
  95. n_repeat_unclassified: 1
  96. exploration: !munch.Munch
  97. mode: [Screening]
  98. selected_mode: 0
  99. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  100. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  101. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  102. audio_path: /kiap/data/speller/Audio/exploration
  103. number_of_stim: 5
  104. feedback: !munch.Munch
  105. selected_mode: 0
  106. play_end_feedback: !munch.Munch {success: true, fail: true}
  107. mode: [Training, Validation]
  108. number_of_stim: 10
  109. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  110. states: !munch.Munch
  111. down: [0.0, 0.0, 0.3]
  112. up: [1.0, 0.7, 1.0]
  113. symmetrical: true
  114. audio_path: /kiap/data/speller/feedback/
  115. variablesToShowInGUI: !munch.Munch
  116. variableGroups: [timing, color]
  117. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  118. t: 1
  119. general: !munch.Munch {debug: 1, clear_trial_history: false}
  120. speller: !munch.Munch {pyttsx_rate: 100, speller_matrix: true, audio_result_fb: true,
  121. type: feedback, audio: true}
  122. feedback: !munch.Munch {target_tone_length: 1.0, alpha: 360, hold_iterations: 2, feedback_tone: true,
  123. target_n_tones: 5, beta: 120, tone_length: 0.25}
  124. recording: !munch.Munch
  125. timing: !munch.Munch {recording_loop_interval: 0.05, bci_loop_interval: 0.05, t_baseline_all: 1.0,
  126. t_response: 5.0, t_baseline_1: 5.0, recording_loop_interval_data: 0.02, decoder_refresh_interval: 0.01,
  127. t_after_stimulus: 0.5, t_baseline_rand: 1.0}
  128. system: !munch.Munch {plot: 0}
  129. session: !munch.Munch
  130. flags: !munch.Munch {bl_rand: true, bl: true, decode: false, stimulus: true}
  131. buffer: !munch.Munch
  132. length: 600
  133. shape: [600, 128]
  134. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  135. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  136. classifier: !munch.Munch
  137. exclude_data_channels: []
  138. include_channels: [20]
  139. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  140. thr_prob: 0.8
  141. saved_model_conf_name: config/model_conf.yaml
  142. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  143. break_loop: true
  144. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  145. thr_window: 40
  146. psth: !munch.Munch
  147. cut: [-40, 100]
  148. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  149. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  150. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  151. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  152. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  153. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  154. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  155. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  156. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  157. online: false
  158. max_active_ch_nr: []
  159. trigger_pos: start
  160. deadtime: 40
  161. n_triggers: 2
  162. n_classes: 2
  163. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  164. args:
  165. - !!python/name:numpy.ndarray ''
  166. - !!python/tuple [0]
  167. - !!binary |
  168. Yg==
  169. state: !!python/tuple
  170. - 1
  171. - !!python/tuple [8]
  172. - !!python/object/apply:numpy.dtype
  173. args: [i8, 0, 1]
  174. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  175. - false
  176. - !!binary |
  177. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  178. AAAAAAAAAA==
  179. n_neg_train: 100000
  180. n_features: 1024
  181. lfp: !munch.Munch
  182. fs: 1000
  183. sampling_ratio: 30
  184. filter_fc_lb: [10, 0]
  185. filter_fc_mb: [12, 40]
  186. filter_fc_hb: [60, 250]
  187. filter_order_lb: 2
  188. filter_order_mb: 6
  189. filter_order_hb: 10
  190. artifact_thr: 400
  191. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  192. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  193. array21: [0, 1]
  194. array22: []
  195. array1_exclude: []
  196. array2_exclude: []
  197. i_start: 0
  198. i_stop: -1
  199. psth_win: [-1000, 5000]
  200. exclude: false
  201. normalize: false
  202. zscore: false
  203. car: true
  204. sub_band: 1
  205. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  206. spectra: !munch.Munch {spgr_len: 500}
  207. plot: !munch.Munch
  208. ch_ids: [0]
  209. general: true
  210. filters: false
  211. array2: [0, 1]