config_dump_13_46_54.yaml 7.9 KB

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  1. !munch.Munch
  2. paradigms: !munch.Munch
  3. exploration: !munch.Munch
  4. mode: [Screening]
  5. selected_mode: 0
  6. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  7. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  8. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  9. audio_path: /kiap/data/speller/Audio/exploration
  10. number_of_stim: 5
  11. feedback: !munch.Munch
  12. states: !munch.Munch
  13. up: [1.0, 0.7, 1.0]
  14. down: [0.0, 0.0, 0.3]
  15. selected_mode: 0
  16. play_end_feedback: !munch.Munch {success: false, fail: false}
  17. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  18. number_of_stim: 10
  19. mode: [Training, Validation]
  20. audio_path: /kiap/data/speller/feedback/
  21. symmetrical: true
  22. color: !munch.Munch
  23. mode: [Validation, Free]
  24. selected_mode: 1
  25. states:
  26. - - gelb
  27. - [E, A, D, C, B, F, ^]
  28. - - gruen
  29. - [N, S, R, O, M, P, Q, ^]
  30. - - rot
  31. - [I, H, L, G, K, J, ^]
  32. - - blau
  33. - [T, U, W, Z, V, Y, X, ^]
  34. - - weiss
  35. - [<, ' ', end, ^]
  36. max_length_vocabulary: 5
  37. confirmation_methods: [single, double_yes, best_of_three]
  38. selected_confirmation_method: 0
  39. corpora_path: /kiap/data/speller/Corpora
  40. audio_path: /kiap/data/speller/Audio
  41. general_corpus: cfd_tiger.p
  42. general_user_corpus: general_user_cfd.txt
  43. speller_user_corpus: speller_user.txt
  44. word_prediction: false
  45. validation_string: ''
  46. init_string: ''
  47. n_repeat_unclassified: 1
  48. question: !munch.Munch
  49. mode: [Training, Validation, Free]
  50. selected_mode: 1
  51. audio_path: /kiap/data/speller/Audio/question
  52. number_of_stim: 10
  53. symmetrical: true
  54. training_color: !munch.Munch
  55. mode: [Training]
  56. selected_mode: 0
  57. states:
  58. - - gelb
  59. - [E, A, D, C, B, F, ^]
  60. - - gruen
  61. - [N, S, R, O, M, P, Q, ^]
  62. - - rot
  63. - [I, H, L, G, K, J, ^]
  64. - - blau
  65. - [T, U, W, Z, V, Y, X, ^]
  66. - - weiss
  67. - [<, ' ', '?', word, end, ^]
  68. training_string: Gustav
  69. confirmation_yes: 1
  70. confirmation_no: 1
  71. variablesToShowInGUI: !munch.Munch
  72. variableGroups: [timing, color]
  73. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  74. t: 1
  75. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback_wo_reward.yaml]
  76. session: !munch.Munch
  77. flags: !munch.Munch {bl: true, decode: false, stimulus: true, bl_rand: false}
  78. feedback: !munch.Munch {alpha: 360, target_n_tones: 5, tone_length: 0.25, target_tone_length: 1.0,
  79. feedback_tone: true, beta: 120, hold_iterations: 2}
  80. speller: !munch.Munch {pyttsx_rate: 100, type: feedback, speller_matrix: true, audio: true,
  81. audio_result_fb: true}
  82. sim_data: !munch.Munch {rate_bl: 10}
  83. buffer: !munch.Munch
  84. length: 600
  85. shape: [600, 128]
  86. plot: !munch.Munch
  87. fps: 10.0
  88. filter_min_rate: 2
  89. pca: false
  90. channels: [20, 96]
  91. system: !munch.Munch {plot: 0}
  92. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  93. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-09-10,
  94. filename_data: /data/clinical/neural/fr/2019-09-10/data_13_46_54.bin, filename_baseline: /data/clinical/neural/fr/2019-09-10/bl_13_46_54.npy,
  95. filename_log_info: /data/clinical/neural/fr/2019-09-10/info_13_46_54.log, filename_log_debug: /data/clinical/neural/fr/2019-09-10/debug_13_46_54.log,
  96. filename_events: /data/clinical/neural/fr/2019-09-10/events_13_46_54.txt, filename_config: /data/clinical/neural/fr/2019-09-10/config_13_46_54.yaml,
  97. filename_paradigm: /data/clinical/neural/fr/2019-09-10/paradigm_13_46_54.yaml, filename_config_dump: /data/clinical/neural/fr/2019-09-10/config_dump_13_46_54.yaml,
  98. filename_git_patch: /data/clinical/neural/fr/2019-09-10/git_changes_13_46_54.patch,
  99. filename_history: /data/clinical/neural/fr/2019-09-10/history.bin, git_hash: 52c204f}
  100. recording: !munch.Munch
  101. timing: !munch.Munch {bci_loop_interval: 0.05, t_response: 5.0, decoder_refresh_interval: 0.01,
  102. recording_loop_interval: 0.05, t_after_stimulus: 0.0, t_baseline_rand: 1.0, t_baseline_all: 1.0,
  103. recording_loop_interval_data: 0.02, t_baseline_1: 5.0}
  104. classifier: !munch.Munch
  105. trigger_pos: start
  106. thr_window: 40
  107. include_channels: [20]
  108. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  109. n_classes: 2
  110. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  111. saved_model_conf_name: config/model_conf.yaml
  112. thr_prob: 0.8
  113. n_neg_train: 100000
  114. max_active_ch_nr: []
  115. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  116. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  117. deadtime: 40
  118. n_triggers: 2
  119. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  120. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  121. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  122. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  123. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  124. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  125. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  126. break_loop: true
  127. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  128. args:
  129. - !!python/name:numpy.ndarray ''
  130. - !!python/tuple [0]
  131. - !!binary |
  132. Yg==
  133. state: !!python/tuple
  134. - 1
  135. - !!python/tuple [8]
  136. - !!python/object/apply:numpy.dtype
  137. args: [i8, 0, 1]
  138. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  139. - false
  140. - !!binary |
  141. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  142. AAAAAAAAAA==
  143. exclude_data_channels: []
  144. psth: !munch.Munch
  145. cut: [-40, 100]
  146. online: false
  147. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  148. n_features: 1024
  149. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  150. general: !munch.Munch {debug: 1, clear_trial_history: false}
  151. daq: !munch.Munch
  152. n_channels_max: 128
  153. car_channels: []
  154. smpl_fct: 30
  155. normalization: !munch.Munch
  156. len: 600.0
  157. update_interval: 10.0
  158. do_update: false
  159. clamp_firing_rates: true
  160. range: [10, 90]
  161. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  162. channels:
  163. - !munch.Munch {id: 20, bottom: 4.0, top: 10.0, invert: true}
  164. use_all_channels: false
  165. exclude_channels: []
  166. data_source: spike_rates
  167. trigger_len: 50
  168. daq_sleep: 0.1
  169. spike_band_power: !munch.Munch
  170. filter: !munch.Munch
  171. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  172. a: [1, -1.91119706742607, 0.914975834801434]
  173. average_n_bins: 10
  174. integrated_samples: 1500
  175. sample_group: 6
  176. loop_interval: 50
  177. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  178. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  179. fs: 30000.0
  180. n_channels: 128
  181. lfp: !munch.Munch
  182. fs: 1000
  183. sampling_ratio: 30
  184. filter_fc_lb: [10, 0]
  185. filter_fc_mb: [12, 40]
  186. filter_fc_hb: [60, 250]
  187. filter_order_lb: 2
  188. filter_order_mb: 6
  189. filter_order_hb: 10
  190. artifact_thr: 400
  191. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  192. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  193. array21: [0, 1]
  194. array22: []
  195. array1_exclude: []
  196. array2_exclude: []
  197. i_start: 0
  198. i_stop: -1
  199. psth_win: [-1000, 5000]
  200. exclude: false
  201. normalize: false
  202. zscore: false
  203. car: true
  204. sub_band: 1
  205. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  206. spectra: !munch.Munch {spgr_len: 500}
  207. plot: !munch.Munch
  208. ch_ids: [0]
  209. general: true
  210. filters: false
  211. array2: [0, 1]