config_dump_16_20_25.yaml 7.9 KB

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  1. !munch.Munch
  2. sim_data: !munch.Munch {rate_bl: 10}
  3. plot: !munch.Munch
  4. channels: [20, 24, 99]
  5. pca: false
  6. fps: 10.0
  7. filter_min_rate: 2
  8. daq: !munch.Munch
  9. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  10. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  11. trigger_len: 50
  12. car_channels: []
  13. spike_band_power: !munch.Munch
  14. average_n_bins: 10
  15. integrated_samples: 1500
  16. filter: !munch.Munch
  17. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  18. a: [1, -1.91119706742607, 0.914975834801434]
  19. loop_interval: 50
  20. sample_group: 6
  21. exclude_channels: []
  22. n_channels_max: 128
  23. daq_sleep: 0.1
  24. smpl_fct: 30
  25. normalization: !munch.Munch
  26. use_all_channels: false
  27. range: [10, 90]
  28. update_interval: 10.0
  29. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  30. do_update: false
  31. channels:
  32. - !munch.Munch {id: 20, bottom: 5.1, top: 10.0, invert: true}
  33. len: 600.0
  34. clamp_firing_rates: true
  35. data_source: spike_rates
  36. fs: 30000.0
  37. n_channels: 128
  38. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  39. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-08-26,
  40. filename_data: /data/clinical/neural/fr/2019-08-26/data_16_20_25.bin, filename_baseline: /data/clinical/neural/fr/2019-08-26/bl_16_20_25.npy,
  41. filename_log_info: /data/clinical/neural/fr/2019-08-26/info_16_20_25.log, filename_log_debug: /data/clinical/neural/fr/2019-08-26/debug_16_20_25.log,
  42. filename_events: /data/clinical/neural/fr/2019-08-26/events_16_20_25.txt, filename_config: /data/clinical/neural/fr/2019-08-26/config_16_20_25.yaml,
  43. filename_paradigm: /data/clinical/neural/fr/2019-08-26/paradigm_16_20_25.yaml, filename_config_dump: /data/clinical/neural/fr/2019-08-26/config_dump_16_20_25.yaml,
  44. filename_git_patch: /data/clinical/neural/fr/2019-08-26/git_changes_16_20_25.patch,
  45. filename_history: /data/clinical/neural/fr/2019-08-26/history.bin, git_hash: 6fcc149}
  46. buffer: !munch.Munch
  47. length: 600
  48. shape: [600, 128]
  49. paradigms: !munch.Munch
  50. question: !munch.Munch
  51. mode: [Training, Validation, Free]
  52. selected_mode: 2
  53. audio_path: /kiap/data/speller/Audio/question
  54. number_of_stim: 10
  55. symmetrical: true
  56. color: !munch.Munch
  57. mode: [Validation, Free]
  58. selected_mode: 1
  59. states:
  60. - - gelb
  61. - [E, A, D, C, B, F, ^]
  62. - - gruen
  63. - [N, S, R, O, M, P, Q, ^]
  64. - - rot
  65. - [I, H, L, G, K, J, ^]
  66. - - blau
  67. - [T, U, W, Z, V, Y, X, ^]
  68. - - weiss
  69. - [<, ' ', '?', word, end, ^]
  70. max_length_vocabulary: 5
  71. confirmation_methods: [single, double_yes, best_of_three]
  72. selected_confirmation_method: 0
  73. corpora_path: /kiap/data/speller/Corpora
  74. audio_path: /kiap/data/speller/Audio
  75. general_corpus: cfd_tiger.p
  76. general_user_corpus: general_user_cfd.txt
  77. speller_user_corpus: speller_user.txt
  78. word_prediction: false
  79. validation_string: FELIX.
  80. init_string: ''
  81. n_repeat_unclassified: 1
  82. variablesToShowInGUI: !munch.Munch
  83. variableGroups: [timing, color]
  84. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  85. t: 1
  86. exploration: !munch.Munch
  87. mode: [Screening]
  88. selected_mode: 0
  89. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  90. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  91. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  92. audio_path: /kiap/data/speller/Audio/exploration
  93. number_of_stim: 5
  94. training_color: !munch.Munch
  95. mode: [Training]
  96. selected_mode: 0
  97. states:
  98. - - gelb
  99. - [E, A, D, C, B, F, ^]
  100. - - gruen
  101. - [N, S, R, O, M, P, Q, ^]
  102. - - rot
  103. - [I, H, L, G, K, J, ^]
  104. - - blau
  105. - [T, U, W, Z, V, Y, X, ^]
  106. - - weiss
  107. - [<, ' ', '?', word, end, ^]
  108. training_string: Gustav
  109. confirmation_yes: 1
  110. confirmation_no: 1
  111. feedback: !munch.Munch
  112. play_end_feedback: !munch.Munch {success: true, fail: true}
  113. audio_path: /kiap/data/speller/feedback/
  114. mode: [Training, Validation]
  115. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  116. number_of_stim: 10
  117. states: !munch.Munch
  118. down: [0.0, 0.0, 0.3]
  119. up: [1.0, 0.7, 1.0]
  120. selected_mode: 0
  121. symmetrical: true
  122. recording: !munch.Munch
  123. timing: !munch.Munch {recording_loop_interval_data: 0.02, t_response: 5.0, decoder_refresh_interval: 0.01,
  124. t_after_stimulus: 0.5, t_baseline_1: 5.0, recording_loop_interval: 0.05, t_baseline_rand: 1.0,
  125. bci_loop_interval: 0.05, t_baseline_all: 1.0}
  126. system: !munch.Munch {plot: 0}
  127. lfp: !munch.Munch
  128. fs: 1000
  129. sampling_ratio: 30
  130. filter_fc_lb: [10, 0]
  131. filter_fc_mb: [12, 40]
  132. filter_fc_hb: [60, 250]
  133. filter_order_lb: 2
  134. filter_order_mb: 6
  135. filter_order_hb: 10
  136. artifact_thr: 400
  137. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  138. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  139. array21: [0, 1]
  140. array22: []
  141. array1_exclude: []
  142. array2_exclude: []
  143. i_start: 0
  144. i_stop: -1
  145. psth_win: [-1000, 5000]
  146. exclude: false
  147. normalize: false
  148. zscore: false
  149. car: true
  150. sub_band: 1
  151. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  152. spectra: !munch.Munch {spgr_len: 500}
  153. plot: !munch.Munch
  154. ch_ids: [0]
  155. general: true
  156. filters: false
  157. array2: [0, 1]
  158. speller: !munch.Munch {audio_result_fb: true, pyttsx_rate: 100, type: feedback, speller_matrix: true,
  159. audio: true}
  160. feedback: !munch.Munch {hold_iterations: 2, feedback_tone: true, beta: 120, target_tone_length: 1.0,
  161. alpha: 360, target_n_tones: 5, tone_length: 0.25}
  162. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  163. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  164. classifier: !munch.Munch
  165. break_loop: true
  166. n_triggers: 2
  167. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  168. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  169. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  170. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  171. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  172. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  173. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  174. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  175. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  176. n_classes: 2
  177. thr_prob: 0.8
  178. exclude_data_channels: []
  179. include_channels: [20]
  180. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  181. saved_model_conf_name: config/model_conf.yaml
  182. thr_window: 40
  183. trigger_pos: start
  184. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  185. n_neg_train: 100000
  186. max_active_ch_nr: []
  187. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  188. args:
  189. - !!python/name:numpy.ndarray ''
  190. - !!python/tuple [0]
  191. - !!binary |
  192. Yg==
  193. state: !!python/tuple
  194. - 1
  195. - !!python/tuple [8]
  196. - !!python/object/apply:numpy.dtype
  197. args: [i8, 0, 1]
  198. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  199. - false
  200. - !!binary |
  201. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  202. AAAAAAAAAA==
  203. psth: !munch.Munch
  204. cut: [-40, 100]
  205. online: false
  206. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  207. deadtime: 40
  208. n_features: 1024
  209. session: !munch.Munch
  210. flags: !munch.Munch {stimulus: true, bl_rand: true, bl: true, decode: false}
  211. general: !munch.Munch {debug: 1, clear_trial_history: false}