config_dump_11_58_42.yaml 7.9 KB

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  1. !munch.Munch
  2. daq: !munch.Munch
  3. n_channels_max: 128
  4. car_channels: []
  5. normalization: !munch.Munch
  6. channels:
  7. - !munch.Munch {id: 20, bottom: 5.1, top: 10.0, invert: true}
  8. range: [10, 90]
  9. update_interval: 10.0
  10. len: 600.0
  11. clamp_firing_rates: true
  12. use_all_channels: false
  13. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  14. do_update: false
  15. spike_band_power: !munch.Munch
  16. sample_group: 6
  17. integrated_samples: 1500
  18. average_n_bins: 10
  19. filter: !munch.Munch
  20. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  21. a: [1, -1.91119706742607, 0.914975834801434]
  22. loop_interval: 50
  23. trigger_len: 50
  24. data_source: spike_rates
  25. exclude_channels: []
  26. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  27. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  28. fs: 30000.0
  29. daq_sleep: 0.1
  30. smpl_fct: 30
  31. n_channels: 128
  32. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  33. speller: !munch.Munch {audio: true, audio_result_fb: true, pyttsx_rate: 100, type: feedback,
  34. speller_matrix: true}
  35. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}
  36. general: !munch.Munch {debug: 1, clear_trial_history: false}
  37. session: !munch.Munch
  38. flags: !munch.Munch {bl_rand: true, decode: false, bl: true, stimulus: true}
  39. recording: !munch.Munch
  40. timing: !munch.Munch {bci_loop_interval: 0.05, t_baseline_all: 1.0, recording_loop_interval_data: 0.02,
  41. t_response: 5.0, t_baseline_rand: 1.0, t_baseline_1: 5.0, recording_loop_interval: 0.05,
  42. t_after_stimulus: 0.5, decoder_refresh_interval: 0.01}
  43. paradigms: !munch.Munch
  44. variablesToShowInGUI: !munch.Munch
  45. variableGroups: [timing, color]
  46. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  47. t: 1
  48. exploration: !munch.Munch
  49. mode: [Screening]
  50. selected_mode: 0
  51. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  52. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  53. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  54. audio_path: /kiap/data/speller/Audio/exploration
  55. number_of_stim: 5
  56. feedback: !munch.Munch
  57. number_of_stim: 10
  58. mode: [Training, Validation]
  59. states: !munch.Munch
  60. down: [0.0, 0.0, 0.3]
  61. up: [1.0, 0.7, 1.0]
  62. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  63. audio_path: /kiap/data/speller/feedback/
  64. symmetrical: true
  65. play_end_feedback: !munch.Munch {fail: true, success: true}
  66. selected_mode: 0
  67. question: !munch.Munch
  68. mode: [Training, Validation, Free]
  69. selected_mode: 2
  70. audio_path: /kiap/data/speller/Audio/question
  71. number_of_stim: 10
  72. symmetrical: true
  73. training_color: !munch.Munch
  74. mode: [Training]
  75. selected_mode: 0
  76. states:
  77. - - gelb
  78. - [E, A, D, C, B, F, ^]
  79. - - gruen
  80. - [N, S, R, O, M, P, Q, ^]
  81. - - rot
  82. - [I, H, L, G, K, J, ^]
  83. - - blau
  84. - [T, U, W, Z, V, Y, X, ^]
  85. - - weiss
  86. - [<, ' ', '?', word, end, ^]
  87. training_string: Gustav
  88. confirmation_yes: 1
  89. confirmation_no: 1
  90. color: !munch.Munch
  91. mode: [Validation, Free]
  92. selected_mode: 1
  93. states:
  94. - - gelb
  95. - [E, A, D, C, B, F, ^]
  96. - - gruen
  97. - [N, S, R, O, M, P, Q, ^]
  98. - - rot
  99. - [I, H, L, G, K, J, ^]
  100. - - blau
  101. - [T, U, W, Z, V, Y, X, ^]
  102. - - weiss
  103. - [<, ' ', '?', word, end, ^]
  104. max_length_vocabulary: 5
  105. confirmation_methods: [single, double_yes, best_of_three]
  106. selected_confirmation_method: 0
  107. corpora_path: /kiap/data/speller/Corpora
  108. audio_path: /kiap/data/speller/Audio
  109. general_corpus: cfd_tiger.p
  110. general_user_corpus: general_user_cfd.txt
  111. speller_user_corpus: speller_user.txt
  112. word_prediction: false
  113. validation_string: FELIX.
  114. init_string: ''
  115. n_repeat_unclassified: 1
  116. system: !munch.Munch {plot: 0}
  117. classifier: !munch.Munch
  118. deadtime: 40
  119. n_classes: 2
  120. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  121. max_active_ch_nr: []
  122. n_triggers: 2
  123. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  124. args:
  125. - !!python/name:numpy.ndarray ''
  126. - !!python/tuple [0]
  127. - !!binary |
  128. Yg==
  129. state: !!python/tuple
  130. - 1
  131. - !!python/tuple [8]
  132. - !!python/object/apply:numpy.dtype
  133. args: [i8, 0, 1]
  134. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  135. - false
  136. - !!binary |
  137. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  138. AAAAAAAAAA==
  139. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  140. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  141. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  142. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  143. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  144. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  145. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  146. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  147. trigger_pos: start
  148. psth: !munch.Munch
  149. cut: [-40, 100]
  150. online: false
  151. break_loop: true
  152. include_channels: [20]
  153. thr_window: 40
  154. thr_prob: 0.8
  155. exclude_data_channels: []
  156. saved_model_conf_name: config/model_conf.yaml
  157. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  158. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  159. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  160. n_neg_train: 100000
  161. n_features: 1024
  162. sim_data: !munch.Munch {rate_bl: 10}
  163. feedback: !munch.Munch {alpha: 360, tone_length: 0.25, feedback_tone: true, target_n_tones: 5,
  164. target_tone_length: 1.0, hold_iterations: 2, beta: 120}
  165. buffer: !munch.Munch
  166. length: 600
  167. shape: [600, 128]
  168. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  169. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-08-16,
  170. filename_data: /data/clinical/neural/fr/2019-08-16/data_11_58_42.bin, filename_baseline: /data/clinical/neural/fr/2019-08-16/bl_11_58_42.npy,
  171. filename_log_info: /data/clinical/neural/fr/2019-08-16/info_11_58_42.log, filename_log_debug: /data/clinical/neural/fr/2019-08-16/debug_11_58_42.log,
  172. filename_events: /data/clinical/neural/fr/2019-08-16/events_11_58_42.txt, filename_config: /data/clinical/neural/fr/2019-08-16/config_11_58_42.yaml,
  173. filename_paradigm: /data/clinical/neural/fr/2019-08-16/paradigm_11_58_42.yaml, filename_config_dump: /data/clinical/neural/fr/2019-08-16/config_dump_11_58_42.yaml,
  174. filename_git_patch: /data/clinical/neural/fr/2019-08-16/git_changes_11_58_42.patch,
  175. filename_history: /data/clinical/neural/fr/2019-08-16/history.bin, git_hash: 6fcc149}
  176. lfp: !munch.Munch
  177. fs: 1000
  178. sampling_ratio: 30
  179. filter_fc_lb: [10, 0]
  180. filter_fc_mb: [12, 40]
  181. filter_fc_hb: [60, 250]
  182. filter_order_lb: 2
  183. filter_order_mb: 6
  184. filter_order_hb: 10
  185. artifact_thr: 400
  186. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  187. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  188. array21: [0, 1]
  189. array22: []
  190. array1_exclude: []
  191. array2_exclude: []
  192. i_start: 0
  193. i_stop: -1
  194. psth_win: [-1000, 5000]
  195. exclude: false
  196. normalize: false
  197. zscore: false
  198. car: true
  199. sub_band: 1
  200. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  201. spectra: !munch.Munch {spgr_len: 500}
  202. plot: !munch.Munch
  203. ch_ids: [0]
  204. general: true
  205. filters: false
  206. array2: [0, 1]
  207. plot: !munch.Munch
  208. channels: [20, 24, 99]
  209. filter_min_rate: 2
  210. fps: 10.0
  211. pca: false