config_dump_14_59_53.yaml 7.9 KB

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  1. !munch.Munch
  2. recording: !munch.Munch
  3. timing: !munch.Munch {t_baseline_1: 5.0, t_response: 5.0, bci_loop_interval: 0.05,
  4. recording_loop_interval_data: 0.02, t_after_stimulus: 0.5, decoder_refresh_interval: 0.01,
  5. recording_loop_interval: 0.05, t_baseline_rand: 1.0, t_baseline_all: 1.0}
  6. file_handling: !munch.Munch {data_path: /data/clinical/neural/fr/, results: /data/clinical/nf/results/,
  7. paradigm_config_file: paradigm.yaml, save_data: true, mode: ab, datafile_path: /data/clinical/neural/fr/2019-08-15,
  8. filename_data: /data/clinical/neural/fr/2019-08-15/data_14_59_53.bin, filename_baseline: /data/clinical/neural/fr/2019-08-15/bl_14_59_53.npy,
  9. filename_log_info: /data/clinical/neural/fr/2019-08-15/info_14_59_53.log, filename_log_debug: /data/clinical/neural/fr/2019-08-15/debug_14_59_53.log,
  10. filename_events: /data/clinical/neural/fr/2019-08-15/events_14_59_53.txt, filename_config: /data/clinical/neural/fr/2019-08-15/config_14_59_53.yaml,
  11. filename_paradigm: /data/clinical/neural/fr/2019-08-15/paradigm_14_59_53.yaml, filename_config_dump: /data/clinical/neural/fr/2019-08-15/config_dump_14_59_53.yaml,
  12. filename_git_patch: /data/clinical/neural/fr/2019-08-15/git_changes_14_59_53.patch,
  13. filename_history: /data/clinical/neural/fr/2019-08-15/history.bin, git_hash: 6fcc149}
  14. supplemental_config: [config/model_conf.yaml, config/channels.yaml, config/feedback.yaml]
  15. system: !munch.Munch {plot: 0}
  16. plot: !munch.Munch
  17. fps: 10.0
  18. filter_min_rate: 2
  19. channels: [20, 24, 99]
  20. pca: false
  21. daq: !munch.Munch
  22. daq_sleep: 0.1
  23. spike_rates: !munch.Munch {n_units: 1, bin_width: 0.05, loop_interval: 50, method: boxcar,
  24. decay_factor: 0.9, max_bins: 20, bl_offset: 30.0, correct_bl: false, correct_bl_model: false}
  25. car_channels: []
  26. trigger_len: 50
  27. n_channels_max: 128
  28. spike_band_power: !munch.Munch
  29. average_n_bins: 10
  30. integrated_samples: 1500
  31. sample_group: 6
  32. loop_interval: 50
  33. filter: !munch.Munch
  34. b: [0.956543225556877, -1.91308645111375, 0.956543225556877]
  35. a: [1, -1.91119706742607, 0.914975834801434]
  36. fs: 30000.0
  37. normalization: !munch.Munch
  38. update_interval: 10.0
  39. clamp_firing_rates: true
  40. len: 600.0
  41. range: [10, 90]
  42. use_all_channels: false
  43. do_update: false
  44. channels:
  45. - !munch.Munch {id: 20, bottom: 5.1, top: 10.0, invert: true}
  46. all_channels: !munch.Munch {bottom: 1.15625, top: 1.59375, invert: false}
  47. smpl_fct: 30
  48. exclude_channels: []
  49. data_source: spike_rates
  50. n_channels: 128
  51. sim_data: !munch.Munch {rate_bl: 10}
  52. speller: !munch.Munch {audio_result_fb: true, speller_matrix: true, type: feedback,
  53. audio: true, pyttsx_rate: 100}
  54. buffer: !munch.Munch
  55. length: 600
  56. shape: [600, 128]
  57. feedback: !munch.Munch {beta: 120, target_n_tones: 5, target_tone_length: 1.0, tone_length: 0.25,
  58. feedback_tone: true, alpha: 360, hold_iterations: 2}
  59. paradigms: !munch.Munch
  60. exploration: !munch.Munch
  61. mode: [Screening]
  62. selected_mode: 0
  63. states: [SchliesseHand, BeugeRechtenMittelfinger, BeugeRechtenZeigefinger, BeugeRechtenDaumen,
  64. OeffneHand, StreckeRechtenMittelfinger, StreckeRechtenZeigefinger, StreckeRechtenDaumen]
  65. selected_states: [0, 1, 2, 3, 4, 5, 6, 7]
  66. audio_path: /kiap/data/speller/Audio/exploration
  67. number_of_stim: 5
  68. question: !munch.Munch
  69. mode: [Training, Validation, Free]
  70. selected_mode: 2
  71. audio_path: /kiap/data/speller/Audio/question
  72. number_of_stim: 10
  73. symmetrical: true
  74. color: !munch.Munch
  75. mode: [Validation, Free]
  76. selected_mode: 1
  77. states:
  78. - - gelb
  79. - [E, A, D, C, B, F, ^]
  80. - - gruen
  81. - [N, S, R, O, M, P, Q, ^]
  82. - - rot
  83. - [I, H, L, G, K, J, ^]
  84. - - blau
  85. - [T, U, W, Z, V, Y, X, ^]
  86. - - weiss
  87. - [<, ' ', '?', word, end, ^]
  88. max_length_vocabulary: 5
  89. confirmation_methods: [single, double_yes, best_of_three]
  90. selected_confirmation_method: 0
  91. corpora_path: /kiap/data/speller/Corpora
  92. audio_path: /kiap/data/speller/Audio
  93. general_corpus: cfd_tiger.p
  94. general_user_corpus: general_user_cfd.txt
  95. speller_user_corpus: speller_user.txt
  96. word_prediction: false
  97. validation_string: FELIX.
  98. init_string: ''
  99. n_repeat_unclassified: 1
  100. feedback: !munch.Munch
  101. symmetrical: true
  102. number_of_stim: 10
  103. play_end_feedback: !munch.Munch {success: true, fail: true}
  104. audio_path: /kiap/data/speller/feedback/
  105. states: !munch.Munch
  106. up: [1.0, 0.7, 1.0]
  107. down: [0.0, 0.0, 0.3]
  108. sounds: !munch.Munch {success: /kiap/data/speller/feedback/kerching.wav, fail: /kiap/data/speller/feedback/blarg.wav}
  109. selected_mode: 0
  110. mode: [Training, Validation]
  111. variablesToShowInGUI: !munch.Munch
  112. variableGroups: [timing, color]
  113. variableNames: [t_baseline, t_response, bci_loop_interval, selected_mode, max_length_vocabulary]
  114. t: 1
  115. training_color: !munch.Munch
  116. mode: [Training]
  117. selected_mode: 0
  118. states:
  119. - - gelb
  120. - [E, A, D, C, B, F, ^]
  121. - - gruen
  122. - [N, S, R, O, M, P, Q, ^]
  123. - - rot
  124. - [I, H, L, G, K, J, ^]
  125. - - blau
  126. - [T, U, W, Z, V, Y, X, ^]
  127. - - weiss
  128. - [<, ' ', '?', word, end, ^]
  129. training_string: Gustav
  130. confirmation_yes: 1
  131. confirmation_no: 1
  132. session: !munch.Munch
  133. flags: !munch.Munch {bl: true, decode: false, bl_rand: true, stimulus: true}
  134. classifier: !munch.Munch
  135. n_classes: 2
  136. template: !!python/object/apply:numpy.core.multiarray._reconstruct
  137. args:
  138. - !!python/name:numpy.ndarray ''
  139. - !!python/tuple [0]
  140. - !!binary |
  141. Yg==
  142. state: !!python/tuple
  143. - 1
  144. - !!python/tuple [8]
  145. - !!python/object/apply:numpy.dtype
  146. args: [i8, 0, 1]
  147. state: !!python/tuple [3, <, null, null, null, -1, -1, 0]
  148. - false
  149. - !!binary |
  150. CgAAAAAAAAAOAAAAAAAAABIAAAAAAAAAFgAAAAAAAAAaAAAAAAAAAB4AAAAAAAAAIgAAAAAAAAAm
  151. AAAAAAAAAA==
  152. saved_model_conf_name: config/model_conf.yaml
  153. thr_prob: 0.8
  154. n_triggers: 2
  155. deadtime: 40
  156. max_active_ch_nr: []
  157. online: false
  158. path_model1: /data/clinical/neural/fr/2019-06-26/model1_104948.pkl
  159. include_channels: [20]
  160. n_neg_train: 100000
  161. peaks: !munch.Munch {distance: 40, sig: pred, prefilter: false}
  162. thr_window: 40
  163. model_training: !munch.Munch {save_model: false, model: scikit, solver: lsqr, cross_validation: true,
  164. n_splits: 5, test_size: 0.2, reg_fact: 0.3, fsel: false, triggers_plot: 3}
  165. psth: !munch.Munch
  166. cut: [-40, 100]
  167. trigger_pos: start
  168. path_model2: /data/clinical/neural/fr/2019-06-26/model2_104948.pkl
  169. break_loop: true
  170. exclude_channels: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17,
  171. 18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
  172. 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58,
  173. 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,
  174. 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,
  175. 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,
  176. 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127]
  177. exclude_data_channels: []
  178. n_features: 1024
  179. general: !munch.Munch {debug: 1, clear_trial_history: false}
  180. lfp: !munch.Munch
  181. fs: 1000
  182. sampling_ratio: 30
  183. filter_fc_lb: [10, 0]
  184. filter_fc_mb: [12, 40]
  185. filter_fc_hb: [60, 250]
  186. filter_order_lb: 2
  187. filter_order_mb: 6
  188. filter_order_hb: 10
  189. artifact_thr: 400
  190. array1: [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
  191. 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63]
  192. array21: [0, 1]
  193. array22: []
  194. array1_exclude: []
  195. array2_exclude: []
  196. i_start: 0
  197. i_stop: -1
  198. psth_win: [-1000, 5000]
  199. exclude: false
  200. normalize: false
  201. zscore: false
  202. car: true
  203. sub_band: 1
  204. motor_mapping: [Zunge, Schliesse_Hand, Oeffne_Hand, Bewege_Augen, Bewege_Kopf]
  205. spectra: !munch.Munch {spgr_len: 500}
  206. plot: !munch.Munch
  207. ch_ids: [0]
  208. general: true
  209. filters: false
  210. array2: [0, 1]
  211. cerebus: !munch.Munch {instance: 0, buffer_reset: true, buffer_size_cont: 30001, buffer_size_comments: 500}