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sub-001_ses-011_acq-undistorted_T1w.html

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  114.                 <li><a class="dropdown-item" href="#errors">Errors</a></li>
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  132.     <div id="Basic visual report" class="mt-5">
    133. 

  133.     <h1 class="sub-report-title pt-5 ps-4">Basic visual report</h1>
    134. 

  134.         <div id="acquisition-undistorted_datatype-figures_desc-background_session-011_subject-001_suffix-T1w" class="ps-4 pe-4 mb-2">
    135. 

  135. <h3 class="run-title mt-3">View of the background of the anatomical image</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
    136. 

  136. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-011_acq-undistorted_desc-background_T1w.svg" style="width: 100%" />
    137. 

  137. </div>
    138. 

  138. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-011_acq-undistorted_desc-background_T1w.svg" target="_blank">sub-001/figures/sub-001_ses-011_acq-undistorted_desc-background_T1w.svg</a></small>
    139. 

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    142. 

  142. <h3 class="run-title mt-3">Zoomed-in mosaic view of the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
    143. 

  143. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-011_acq-undistorted_desc-zoomed_T1w.svg" style="width: 100%" />
    144. 

  144. </div>
    145. 

  145. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-011_acq-undistorted_desc-zoomed_T1w.svg" target="_blank">sub-001/figures/sub-001_ses-011_acq-undistorted_desc-zoomed_T1w.svg</a></small>
    146. 

  146. 

  147.         </div>
    148. 

  148.     </div>
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  149.     <div id="About" class="mt-5">
    150. 

  150.     <h1 class="sub-report-title pt-5 ps-4">About</h1>
    151. 

  151.         <div id="errors" class="ps-4 pe-4 mb-2">
    152. 

  152. <h2 class="sub-report-group mt-4">Errors</h2>                    <p class="alert alert-success" role="alert">No errors to report!</p>
    153. 

  153.         </div>
    154. 

  154.         <div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
    155. 

  155. <h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
    156. 

  156. reconstructing the provenance of the corresponding derivatives.
    157. 

  157. </p>                    <div class="accordion accordion-flush" id="about-metadata">
    158. 

  158. 

  159. 

  160.   <div class="accordion-item">
    161. 

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    163. 

  163.         Provenance Information
    164. 

  164.       </button>
    165. 

  165.     </h2>
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    167. 

  167.       <div class="accordion-body metadata-table">
    168. 

  168.       <table id="about-metadata-table-0" class="table table-sm table-striped">
    169. 

  169. <tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
    170. 

  170. <tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-011/anat/sub-001_ses-011_acq-undistorted_T1w.nii.gz</td></tr>
    171. 

  171. <tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
    172. 

  172. <tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
    173. 

  173. <tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
    174. 

  174. <tr><td colspan=2>md5sum</td><td>2f8f8a344d63d0f18108abb2e54412c3</td></tr>
    175. 

  175. <tr><td>warnings</td><td>large_rot_frame</td><td>True</td></tr>
    176. 

  176. <tr><td>warnings</td><td>small_air_mask</td><td>False</td></tr>
    177. 

  177. </table>
    178. 

  178. 

  179.       </div>
    180. 

  180.     </div>
    181. 

  181.   </div>
    182. 

  182. 

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  186.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
    187. 

  187.         Dataset Information
    188. 

  188.       </button>
    189. 

  189.     </h2>
    190. 

  190.     <div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
    191. 

  191.       <div class="accordion-body metadata-table">
    192. 

  192.       <table id="about-metadata-table-1" class="table table-sm table-striped">
    193. 

  193. <tr><td colspan=2>AcquisitionMatrixPE</td><td>252</td></tr>
    194. 

  194. <tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
    195. 

  195. <tr><td colspan=2>AcquisitionTime</td><td>20:23:38.885000</td></tr>
    196. 

  196. <tr><td colspan=2>BaseResolution</td><td>288</td></tr>
    197. 

  197. <tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
    198. 

  198. <tr><td colspan=2>CoilCombinationMethod</td><td>Adaptive Combine</td></tr>
    199. 

  199. <tr><td colspan=2>CoilString</td><td>HeadNeck_64</td></tr>
    200. 

  200. <tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
    201. 

  201. <tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20220720</td></tr>
    202. 

  202. <tr><td colspan=2>DeviceSerialNumber</td><td>67014</td></tr>
    203. 

  203. <tr><td colspan=2>DwellTime</td><td>6.7e-06</td></tr>
    204. 

  204. <tr><td colspan=2>EchoTime</td><td>0.00255</td></tr>
    205. 

  205. <tr><td colspan=2>FlipAngle</td><td>8</td></tr>
    206. 

  206. <tr><td colspan=2>HeudiconvVersion</td><td>1.0.0</td></tr>
    207. 

  207. <tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[1, -1.1103e-11, 4e-06, -4.897e-12, 1, 4e-06]</td></tr>
    208. 

  208. <tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D', 'FM3', '2', 'FIL', 'MFSPLIT']</td></tr>
    209. 

  209. <tr><td colspan=2>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'NONE']</td></tr>
    210. 

  210. <tr><td colspan=2>ImagingFrequency</td><td>123.248</td></tr>
    211. 

  211. <tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>ROW</td></tr>
    212. 

  212. <tr><td colspan=2>InstitutionAddress</td><td>Rue du Bugnon 21,Lausanne,District,CH,1011</td></tr>
    213. 

  213. <tr><td colspan=2>InstitutionName</td><td>CHUV</td></tr>
    214. 

  214. <tr><td colspan=2>InversionTime</td><td>0.9</td></tr>
    215. 

  215. <tr><td colspan=2>MRAcquisitionType</td><td>3D</td></tr>
    216. 

  216. <tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
    217. 

  217. <tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
    218. 

  218. <tr><td colspan=2>ManufacturersModelName</td><td>MAGNETOM Prisma Fit</td></tr>
    219. 

  219. <tr><td colspan=2>MatrixCoilMode</td><td>GRAPPA</td></tr>
    220. 

  220. <tr><td colspan=2>Modality</td><td>MR</td></tr>
    221. 

  221. <tr><td colspan=2>NonlinearGradientCorrection</td><td>True</td></tr>
    222. 

  222. <tr><td colspan=2>ParallelReductionFactorInPlane</td><td>2</td></tr>
    223. 

  223. <tr><td colspan=2>PartialFourier</td><td>1</td></tr>
    224. 

  224. <tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
    225. 

  225. <tr><td colspan=2>PercentPhaseFOV</td><td>87.5</td></tr>
    226. 

  226. <tr><td colspan=2>PercentSampling</td><td>100</td></tr>
    227. 

  227. <tr><td colspan=2>PhaseEncodingSteps</td><td>252</td></tr>
    228. 

  228. <tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
    229. 

  229. <tr><td colspan=2>PixelBandwidth</td><td>259</td></tr>
    230. 

  230. <tr><td colspan=2>ProcedureStepDescription</td><td>RESEARCH Oscar</td></tr>
    231. 

  231. <tr><td colspan=2>ProtocolName</td><td>anat-T1w__t1_mprage_tra_p2_iso_siemens_axial</td></tr>
    232. 

  232. <tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%\tfl</td></tr>
    233. 

  233. <tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-6</td></tr>
    234. 

  234. <tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
    235. 

  235. <tr><td colspan=2>ReconMatrixPE</td><td>252</td></tr>
    236. 

  236. <tr><td colspan=2>RefLinesPE</td><td>24</td></tr>
    237. 

  237. <tr><td colspan=2>RepetitionTime</td><td>2.2</td></tr>
    238. 

  238. <tr><td colspan=2>SAR</td><td>0.0393097</td></tr>
    239. 

  239. <tr><td colspan=2>ScanOptions</td><td>PER</td></tr>
    240. 

  240. <tr><td colspan=2>ScanningSequence</td><td>GR</td></tr>
    241. 

  241. <tr><td colspan=2>SequenceName</td><td>*tfl3d1_16</td></tr>
    242. 

  242. <tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
    243. 

  243. <tr><td colspan=2>SeriesDescription</td><td>anat-T1w__t1_mprage_tra_p2_iso_siemens_axial</td></tr>
    244. 

  244. <tr><td colspan=2>SeriesNumber</td><td>5</td></tr>
    245. 

  245. <tr><td colspan=2>ShimSetting</td><td>[8227, -5660, -6265, 329, -51, -148, 54, 19]</td></tr>
    246. 

  246. <tr><td colspan=2>SliceThickness</td><td>0.8</td></tr>
    247. 

  247. <tr><td colspan=2>SoftwareVersions</td><td>syngo MR XA30</td></tr>
    248. 

  248. <tr><td colspan=2>StationName</td><td>LRG10884</td></tr>
    249. 

  249. <tr><td colspan=2>TxRefAmp</td><td>242.543</td></tr>
    250. 

  250. <tr><td>dcmmeta</td><td>affine</td><td>[[0.7986109852790833, -3.9107979007968474e-12, 0.0, -99.82636260986328], [-8.86697833213379e-12, 0.7986109852790833, 0.0, -86.8443603515625], [-3.194443934262381e-06, -3.194443934262381e-06, 0.800000011920929, -61.352882385253906], [0.0, 0.0, 0.0, 1.0]]</td></tr>
    251. 

  251. <tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, -1.0, 0.0, 287.0], [-1.0, 0.0, 0.0, 251.0], [0.0, 0.0, -1.0, 191.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
    252. 

  252. <tr><td>dcmmeta</td><td>shape</td><td>[252, 288, 192]</td></tr>
    253. 

  253. <tr><td>dcmmeta</td><td>slice_dim</td><td>2</td></tr>
    254. 

  254. <tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
    255. 

  255. </table>
    256. 

  256. 

  257.       </div>
    258. 

  258.     </div>
    259. 

  259.   </div>
    260. 

  260. 

  261. 

  262.   <div class="accordion-item">
    263. 

  263.     <h2 class="accordion-header" id="about-metadata-2">
    264. 

  264.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
    265. 

  265.         Extracted Image quality metrics (IQMs)
    266. 

  266.       </button>
    267. 

  267.     </h2>
    268. 

  268.     <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
    269. 

  269.       <div class="accordion-body metadata-table">
    270. 

  270.       <table id="about-metadata-table-2" class="table table-sm table-striped">
    271. 

  271. <tr><td colspan=3>cjv</td><td>0.5980305660377357</td></tr>
    272. 

  272. <tr><td colspan=3>cnr</td><td>1.5996479215849602</td></tr>
    273. 

  273. <tr><td colspan=3>efc</td><td>0.5375</td></tr>
    274. 

  274. <tr><td colspan=3>fber</td><td>10002.299</td></tr>
    275. 

  275. <tr><td>fwhm</td><td colspan=2>avg</td><td>4.7420776158724065</td></tr>
    276. 

  276. <tr><td>fwhm</td><td colspan=2>x</td><td>4.357540860502793</td></tr>
    277. 

  277. <tr><td>fwhm</td><td colspan=2>y</td><td>5.315742054958667</td></tr>
    278. 

  278. <tr><td>fwhm</td><td colspan=2>z</td><td>4.55294993215576</td></tr>
    279. 

  279. <tr><td>icvs</td><td colspan=2>csf</td><td>0.27669970752961925</td></tr>
    280. 

  280. <tr><td>icvs</td><td colspan=2>gm</td><td>0.3765631214322021</td></tr>
    281. 

  281. <tr><td>icvs</td><td colspan=2>wm</td><td>0.3467371710381787</td></tr>
    282. 

  282. <tr><td>inu</td><td colspan=2>med</td><td>0.613227367401123</td></tr>
    283. 

  283. <tr><td>inu</td><td colspan=2>range</td><td>0.3130835086107254</td></tr>
    284. 

  284. <tr><td>qi</td><td colspan=2>1</td><td>0.0</td></tr>
    285. 

  285. <tr><td>qi</td><td colspan=2>2</td><td>0.001755462693359548</td></tr>
    286. 

  286. <tr><td>rpve</td><td colspan=2>csf</td><td>4.657168876876712</td></tr>
    287. 

  287. <tr><td>rpve</td><td colspan=2>gm</td><td>4.561381718361348</td></tr>
    288. 

  288. <tr><td>rpve</td><td colspan=2>wm</td><td>4.643323562926082</td></tr>
    289. 

  289. <tr><td>size</td><td colspan=2>x</td><td>252</td></tr>
    290. 

  290. <tr><td>size</td><td colspan=2>y</td><td>288</td></tr>
    291. 

  291. <tr><td>size</td><td colspan=2>z</td><td>192</td></tr>
    292. 

  292. <tr><td>snr</td><td colspan=2>csf</td><td>1.6442768259395726</td></tr>
    293. 

  293. <tr><td>snr</td><td colspan=2>gm</td><td>5.18122384574713</td></tr>
    294. 

  294. <tr><td>snr</td><td colspan=2>total</td><td>5.62631629333588</td></tr>
    295. 

  295. <tr><td>snr</td><td colspan=2>wm</td><td>10.05344820832094</td></tr>
    296. 

  296. <tr><td>snrd</td><td colspan=2>csf</td><td>27.1307214609559</td></tr>
    297. 

  297. <tr><td>snrd</td><td colspan=2>gm</td><td>57.08237420531394</td></tr>
    298. 

  298. <tr><td>snrd</td><td colspan=2>total</td><td>54.42738005622957</td></tr>
    299. 

  299. <tr><td>snrd</td><td colspan=2>wm</td><td>79.06904450241888</td></tr>
    300. 

  300. <tr><td>spacing</td><td colspan=2>x</td><td>0.7986109852790833</td></tr>
    301. 

  301. <tr><td>spacing</td><td colspan=2>y</td><td>0.7986109852790833</td></tr>
    302. 

  302. <tr><td>spacing</td><td colspan=2>z</td><td>0.800000011920929</td></tr>
    303. 

  303. <tr><td>summary</td><td>bg</td><td>k</td><td>381.3208</td></tr>
    304. 

  304. <tr><td>summary</td><td>bg</td><td>mad</td><td>7.8962</td></tr>
    305. 

  305. <tr><td>summary</td><td>bg</td><td>mean</td><td>7.6255</td></tr>
    306. 

  306. <tr><td>summary</td><td>bg</td><td>median</td><td>6.0</td></tr>
    307. 

  307. <tr><td>summary</td><td>bg</td><td>n</td><td>4734931.0</td></tr>
    308. 

  308. <tr><td>summary</td><td>bg</td><td>p05</td><td>0.0</td></tr>
    309. 

  309. <tr><td>summary</td><td>bg</td><td>p95</td><td>17.0</td></tr>
    310. 

  310. <tr><td>summary</td><td>bg</td><td>stdv</td><td>28.7321</td></tr>
    311. 

  311. <tr><td>summary</td><td>csf</td><td>k</td><td>-0.893</td></tr>
    312. 

  312. <tr><td>summary</td><td>csf</td><td>mad</td><td>163.7465</td></tr>
    313. 

  313. <tr><td>summary</td><td>csf</td><td>mean</td><td>343.0836</td></tr>
    314. 

  314. <tr><td>summary</td><td>csf</td><td>median</td><td>327.0</td></tr>
    315. 

  315. <tr><td>summary</td><td>csf</td><td>n</td><td>812583.4783883397</td></tr>
    316. 

  316. <tr><td>summary</td><td>csf</td><td>p05</td><td>37.0</td></tr>
    317. 

  317. <tr><td>summary</td><td>csf</td><td>p95</td><td>692.0</td></tr>
    318. 

  318. <tr><td>summary</td><td>csf</td><td>stdv</td><td>198.8715</td></tr>
    319. 

  319. <tr><td>summary</td><td>gm</td><td>k</td><td>-0.4679</td></tr>
    320. 

  320. <tr><td>summary</td><td>gm</td><td>mad</td><td>87.6067</td></tr>
    321. 

  321. <tr><td>summary</td><td>gm</td><td>mean</td><td>688.6783</td></tr>
    322. 

  322. <tr><td>summary</td><td>gm</td><td>median</td><td>688.0</td></tr>
    323. 

  323. <tr><td>summary</td><td>gm</td><td>n</td><td>1105852.1665166381</td></tr>
    324. 

  324. <tr><td>summary</td><td>gm</td><td>p05</td><td>466.0</td></tr>
    325. 

  325. <tr><td>summary</td><td>gm</td><td>p95</td><td>936.0</td></tr>
    326. 

  326. <tr><td>summary</td><td>gm</td><td>stdv</td><td>132.7871</td></tr>
    327. 

  327. <tr><td>summary</td><td>wm</td><td>k</td><td>-0.1668</td></tr>
    328. 

  328. <tr><td>summary</td><td>wm</td><td>mad</td><td>70.8714</td></tr>
    329. 

  329. <tr><td>summary</td><td>wm</td><td>mean</td><td>931.4807</td></tr>
    330. 

  330. <tr><td>summary</td><td>wm</td><td>median</td><td>953.0</td></tr>
    331. 

  331. <tr><td>summary</td><td>wm</td><td>n</td><td>1018262.3575725167</td></tr>
    332. 

  332. <tr><td>summary</td><td>wm</td><td>p05</td><td>743.0</td></tr>
    333. 

  333. <tr><td>summary</td><td>wm</td><td>p95</td><td>1053.0</td></tr>
    334. 

  334. <tr><td>summary</td><td>wm</td><td>stdv</td><td>94.7933</td></tr>
    335. 

  335. <tr><td>tpm</td><td>overlap</td><td>csf</td><td>0.1876664544403461</td></tr>
    336. 

  336. <tr><td>tpm</td><td>overlap</td><td>gm</td><td>0.5328099400406441</td></tr>
    337. 

  337. <tr><td>tpm</td><td>overlap</td><td>wm</td><td>0.5489363061026042</td></tr>
    338. 

  338. <tr><td colspan=3>wm2max</td><td>0.47276509986103255</td></tr>
    339. 

  339. </table>
    340. 

  340. 

  341.       </div>
    342. 

  342.     </div>
    343. 

  343.   </div>
    344. 

  344. 

  345. </div>
    346. 

  346.         </div>
    347. 

  347.     </div>
    348. 

  348. 

  349. <div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%;">
    350. 

  350. <div class="card-header m-0">
    351. 

  351.     Rating widget
    352. 

  352.     <button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
    353. 

  353. </div>
    354. 

  354. <div class="card-body">
    355. 

  355. <div class="accordion">
    356. 

  356.   <div class="accordion-item">
    357. 

  357.     <h2 class="accordion-header" id="qcslider-head">
    358. 

  358.       <button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
    359. 

  359.     </h2>
    360. 

  360.     <div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
    361. 

  361.       <div class="accordion-body">
    362. 

  362.         <input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
    363. 

  363.         <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
    364. 

  364.             <li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
    365. 

  365.             <li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
    366. 

  366.             <li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
    367. 

  367.             <li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
    368. 

  368.         </ul>
    369. 

  369.       </div>
    370. 

  370.     </div>
    371. 

  371.   </div>
    372. 

  372. 

  373.   <div class="accordion-item">
    374. 

  374.     <h2 class="accordion-header" id="qcartifacts-head">
    375. 

  375.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
    376. 

  376.         Record specific artifacts
    377. 

  377.       </button>
    378. 

  378.     </h2>
    379. 

  379.     <div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
    380. 

  380.       <div class="accordion-body">
    381. 

  381.         <fieldset id="qcartifacts-group" class="form-group">
    382. 

  382.             <div class="form-check form-switch small">
    383. 

  383.                 <input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
    384. 

  384.                 <label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
    385. 

  385.             </div>
    386. 

  386.             <div class="form-check form-switch small">
    387. 

  387.                 <input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
    388. 

  388.                 <label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
    389. 

  389.             </div>
    390. 

  390.             <div class="form-check form-switch small">
    391. 

  391.                 <input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
    392. 

  392.                 <label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
    393. 

  393.             </div>
    394. 

  394.             <div class="form-check form-switch small">
    395. 

  395.                 <input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
    396. 

  396.                 <label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
    397. 

  397.             </div>
    398. 

  398.             <div class="form-check form-switch small">
    399. 

  399.                 <input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
    400. 

  400.                 <label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
    401. 

  401.             </div>
    402. 

  402.             <div class="form-check form-switch small">
    403. 

  403.                 <input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
    404. 

  404.                 <label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
    405. 

  405.             </div>
    406. 

  406.             <div class="form-check form-switch small">
    407. 

  407.                 <input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
    408. 

  408.                 <label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
    409. 

  409.             </div>
    410. 

  410.             <div class="form-check form-switch small">
    411. 

  411.                 <input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
    412. 

  412.                 <label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
    413. 

  413.             </div>
    414. 

  414.             <div class="form-check form-switch small">
    415. 

  415.                 <input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
    416. 

  416.                 <label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
    417. 

  417.             </div>
    418. 

  418.             <div class="form-check form-switch small">
    419. 

  419.                 <input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
    420. 

  420.                 <label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
    421. 

  421.             </div>
    422. 

  422.             <div class="form-check form-switch small">
    423. 

  423.                 <input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
    424. 

  424.                 <label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
    425. 

  425.             </div>
    426. 

  426.             <div class="form-check form-switch small">
    427. 

  427.                 <input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
    428. 

  428.                 <label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
    429. 

  429.             </div>
    430. 

  430.             <div class="form-check form-switch small">
    431. 

  431.                 <input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
    432. 

  432.                 <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
    433. 

  433.             </div>
    434. 

  434.             <div class="form-check form-switch small">
    435. 

  435.                 <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
    436. 

  436.                 <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
    437. 

  437.             </div>
    438. 

  438.         </fieldset>
    439. 

  439.       </div> <!-- accordion-body -->
    440. 

  440.     </div> <!-- accordion-collapse -->
    441. 

  441.   </div> <!-- accordion-item -->
    442. 

  442.   <div class="accordion-item">
    443. 

  443.     <h2 class="accordion-header" id="qcextra-head">
    444. 

  444.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
    445. 

  445.         Extra details
    446. 

  446.       </button>
    447. 

  447.     </h2>
    448. 

  448.     <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
    449. 

  449.       <div class="accordion-body">
    450. 

  450.         <div class="input-group">
    451. 

  451.           <span class="input-group-text">Comments</span>
    452. 

  452.           <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
    453. 

  453.         </div>
    454. 

  454. 

  455.         <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
    456. 

  456.         <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
    457. 

  457.         <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
    458. 

  458.             <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
    459. 

  459.             <li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
    460. 

  460.         </ul>
    461. 

  461.        </div> <!-- accordion-body -->
    462. 

  462.     </div> <!-- accordion-collapse -->
    463. 

  463.   </div> <!-- accordion-item -->
    464. 

  464. </div>
    465. 

  465. <div style="margin-top: 10px">
    466. 

  466. <a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
    467. 

  467. </div>
    468. 

  468. <script type="text/javascript">
    469. 

  469. var MINIMUM_RATING_TIME = 10
    470. 

  470. $('#qcslider').on('input', function() {
    471. 

  471. 

  472.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    473. 

  473.         $('#btn-download').removeClass('disabled');
    474. 

  474.         $('#btn-download').removeAttr('aria-disabled');
    475. 

  475.         $('#btn-post').removeAttr('disabled');
    476. 

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    477. 

  477. 

  478.     $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
    479. 

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    480. 

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  481.     $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
    482. 

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    483. 

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    484. 

  484. 

  485.     if ( $(this).val() < 1.5 ) {
    486. 

  486.         $('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
    487. 

  487.     } else if ( $(this).val() > 3.5 ) {
    488. 

  488.         $('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
    489. 

  489.     } else if ( $(this).val() < 2.5 ) {
    490. 

  490.         $('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
    491. 

  491.     } else {
    492. 

  492.         $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
    493. 

  493.     };
    494. 

  494. 

  495.     var payload = read_form();
    496. 

  496. });
    497. 

  497. 

  498. $('#qcextra-confidence').on('input', function() {
    499. 

  499.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    500. 

  500.         $('#btn-download').removeClass('disabled');
    501. 

  501.         $('#btn-download').removeAttr('aria-disabled');
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  502.         $('#btn-post').removeAttr('disabled');
    503. 

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    504. 

  504. 

  505.     $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
    506. 

  506.         return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
    507. 

  507.     });
    508. 

  508.     $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
    509. 

  509.         return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
    510. 

  510.     });
    511. 

  511. 

  512.     if ( $(this).val() < 2.0 ) {
    513. 

  513.         $('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
    514. 

  514.     } else {
    515. 

  515.         $('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
    516. 

  516.     };
    517. 

  517. 

  518.     var payload = read_form();
    519. 

  519. });
    520. 

  520. 

  521. 

  522. $('#qcextra-comments').bind('input propertychange', function() {
    523. 

  523.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    524. 

  524.         $('#btn-download').removeClass('disabled');
    525. 

  525.         $('#btn-download').removeAttr('aria-disabled');
    526. 

  526.         $('#btn-post').removeAttr('disabled');
    527. 

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    528. 

  528. });
    529. 

  529. 

  530. $( '#btn-post' ).click( function() {
    531. 

  531.     var payload = read_form();
    532. 

  532.     var md5sum = "unspecified";
    533. 

  533.     var params = {
    534. 

  534.         'rating': payload['rating'],
    535. 

  535.         'md5sum': md5sum,
    536. 

  536.         'name': "",
    537. 

  537.         'comment': JSON.stringify(payload['artifacts'])
    538. 

  538.     };
    539. 

  539. 

  540.     // disable development releases
    541. 

  541.     var authorization = $(this).val();
    542. 

  542.     var ratingReq = new XMLHttpRequest();
    543. 

  543.     ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
    544. 

  544.     ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
    545. 

  545.     ratingReq.setRequestHeader("Authorization", authorization);
    546. 

  546.     ratingReq.onload = function () {
    547. 

  547.         status = ratingReq.status;
    548. 

  548.         $('#btn-post').removeClass('btn-primary');
    549. 

  549.         $('#btn-post').attr('disabled', true);
    550. 

  550.         $('#btn-post').attr('aria-disabled', true);
    551. 

  551.         $('#btn-post').prop('disabled');
    552. 

  552.         $('#btn-post').addClass('disabled');
    553. 

  553.         $('#btn-post').removeClass('active');
    554. 

  554.         if (status === "201") {
    555. 

  555.             $('#btn-post').addClass('btn-success');
    556. 

  556.             $('#btn-post').html('Posted!');
    557. 

  557.         } else {
    558. 

  558.             $('#btn-post').addClass('btn-danger');
    559. 

  559.             $('#btn-post').html('Failed');
    560. 

  560.         };
    561. 

  561.     };
    562. 

  562.     ratingReq.send(JSON.stringify(params));
    563. 

  563. });
    564. 

  564. 

  565. $( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
    566. 

  566.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    567. 

  567.         $('#btn-download').removeClass('disabled');
    568. 

  568.         $('#btn-download').removeAttr('aria-disabled');
    569. 

  569.         $('#btn-post').removeAttr('disabled');
    570. 

  570.     };
    571. 

  571.     
    572. 

  572.     var payload = read_form();
    573. 

  573. });
    574. 

  574. 

  575. $( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
    576. 

  576.     toggle_rating();
    577. 

  577. });
    578. 

  578. </script>
    579. 

  579. </div>
    580. 

  580. 

  581. <script type="text/javascript">
    582. 

  582. function toggle(id) {
    583. 

  583.     var element = document.getElementById(id);
    584. 

  584.     if(element.style.display == 'block')
    585. 

  585.         element.style.display = 'none';
    586. 

  586.     else
    587. 

  587.         element.style.display = 'block';
    588. 

  588. }
    589. 

  589. </script>
    590. 

  590. </body>
    591. 

  591. </html>
    592.