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    109. 

  109.             <a class="nav-link dropdown-toggle" id="navbarBasic echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Basic echo-wise reports">
    110. 

  110.             Basic echo-wise reports
    111. 

  111.             </a>
    112. 

  112.             <ul class="dropdown-menu">
    113. 

  113.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-stdev_echo-1_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">1</span>.</a></li>
    114. 

  114.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-stdev_echo-2_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">2</span>.</a></li>
    115. 

  115.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-stdev_echo-3_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">3</span>.</a></li>
    116. 

  116.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-stdev_echo-4_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">4</span>.</a></li>
    117. 

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  118.         </li>
    119. 

  119.         <li class="nav-item dropdown">
    120. 

  120.             <a class="nav-link dropdown-toggle" id="navbarExtended echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Extended echo-wise reports">
    121. 

  121.             Extended echo-wise reports
    122. 

  122.             </a>
    123. 

  123.             <ul class="dropdown-menu">
    124. 

  124.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-mean_echo-1_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">1</span>.</a></li>
    125. 

  125.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-mean_echo-2_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">2</span>.</a></li>
    126. 

  126.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-mean_echo-3_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">3</span>.</a></li>
    127. 

  127.                 <li><a class="dropdown-item" href="#acquisition-fa80_datatype-figures_desc-mean_echo-4_session-pilot005_subject-001_suffix-bold_task-rest">Reports for: echo <span class="bids-entity">4</span>.</a></li>
    128. 

  128.             </ul>
    129. 

  129.         </li>
    130. 

  130.         <li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
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  132.             <a class="nav-link dropdown-toggle" id="navbarAbout" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#About">
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  133.             About
    134. 

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    136. 

  136.                 <li><a class="dropdown-item" href="#errors">Errors</a></li>
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  137.                 <li><a class="dropdown-item" href="#meta-about-metadata">Reproducibility and provenance information</a></li>
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  151.     <h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
    152. 

  152. </noscript>
    153. 

  153. 

  154.     <div id="Basic echo-wise reports" class="mt-5">
    155. 

  155.     <h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
    156. 

  156.         <div id="acquisition-fa80_datatype-figures_desc-stdev_echo-1_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    157. 

  157. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p>                    <div class="reportlet">
    158. 

  158. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-stdev_bold.svg" style="width: 100%" />
    159. 

  159. </div>
    160. 

  160. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-stdev_bold.svg</a></small>
    161. 

  161. 

  162.         </div>
    163. 

  163.         <div id="acquisition-fa80_datatype-figures_desc-background_echo-1_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    164. 

  164. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
    165. 

  165. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-background_bold.svg" style="width: 100%" />
    166. 

  166. </div>
    167. 

  167. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-background_bold.svg</a></small>
    168. 

  168. 

  169.         </div>
    170. 

  170.         <div id="acquisition-fa80_datatype-figures_desc-zoomed_echo-1_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    171. 

  171. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
    172. 

  172. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-zoomed_bold.svg" style="width: 100%" />
    173. 

  173. </div>
    174. 

  174. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-zoomed_bold.svg</a></small>
    175. 

  175. 

  176.         </div>
    177. 

  177.         <div id="acquisition-fa80_datatype-figures_desc-carpet_echo-1_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    178. 

  178. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p>                    <div class="reportlet">
    179. 

  179. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-carpet_bold.svg" style="width: 100%" />
    180. 

  180. </div>
    181. 

  181. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-carpet_bold.svg</a></small>
    182. 

  182. 

  183.         </div>
    184. 

  184.         <div id="acquisition-fa80_datatype-figures_desc-stdev_echo-2_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    185. 

  185. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p>                    <div class="reportlet">
    186. 

  186. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-stdev_bold.svg" style="width: 100%" />
    187. 

  187. </div>
    188. 

  188. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-stdev_bold.svg</a></small>
    189. 

  189. 

  190.         </div>
    191. 

  191.         <div id="acquisition-fa80_datatype-figures_desc-background_echo-2_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    192. 

  192. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
    193. 

  193. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-background_bold.svg" style="width: 100%" />
    194. 

  194. </div>
    195. 

  195. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-background_bold.svg</a></small>
    196. 

  196. 

  197.         </div>
    198. 

  198.         <div id="acquisition-fa80_datatype-figures_desc-zoomed_echo-2_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    199. 

  199. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
    200. 

  200. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-zoomed_bold.svg" style="width: 100%" />
    201. 

  201. </div>
    202. 

  202. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-zoomed_bold.svg</a></small>
    203. 

  203. 

  204.         </div>
    205. 

  205.         <div id="acquisition-fa80_datatype-figures_desc-carpet_echo-2_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    206. 

  206. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p>                    <div class="reportlet">
    207. 

  207. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-carpet_bold.svg" style="width: 100%" />
    208. 

  208. </div>
    209. 

  209. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-carpet_bold.svg</a></small>
    210. 

  210. 

  211.         </div>
    212. 

  212.         <div id="acquisition-fa80_datatype-figures_desc-stdev_echo-3_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    213. 

  213. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p>                    <div class="reportlet">
    214. 

  214. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-stdev_bold.svg" style="width: 100%" />
    215. 

  215. </div>
    216. 

  216. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-stdev_bold.svg</a></small>
    217. 

  217. 

  218.         </div>
    219. 

  219.         <div id="acquisition-fa80_datatype-figures_desc-background_echo-3_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    220. 

  220. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
    221. 

  221. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-background_bold.svg" style="width: 100%" />
    222. 

  222. </div>
    223. 

  223. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-background_bold.svg</a></small>
    224. 

  224. 

  225.         </div>
    226. 

  226.         <div id="acquisition-fa80_datatype-figures_desc-zoomed_echo-3_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    227. 

  227. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
    228. 

  228. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-zoomed_bold.svg" style="width: 100%" />
    229. 

  229. </div>
    230. 

  230. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-zoomed_bold.svg</a></small>
    231. 

  231. 

  232.         </div>
    233. 

  233.         <div id="acquisition-fa80_datatype-figures_desc-carpet_echo-3_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    234. 

  234. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p>                    <div class="reportlet">
    235. 

  235. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-carpet_bold.svg" style="width: 100%" />
    236. 

  236. </div>
    237. 

  237. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-carpet_bold.svg</a></small>
    238. 

  238. 

  239.         </div>
    240. 

  240.         <div id="acquisition-fa80_datatype-figures_desc-stdev_echo-4_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    241. 

  241. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p>                    <div class="reportlet">
    242. 

  242. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-stdev_bold.svg" style="width: 100%" />
    243. 

  243. </div>
    244. 

  244. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-stdev_bold.svg</a></small>
    245. 

  245. 

  246.         </div>
    247. 

  247.         <div id="acquisition-fa80_datatype-figures_desc-background_echo-4_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    248. 

  248. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
    249. 

  249. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-background_bold.svg" style="width: 100%" />
    250. 

  250. </div>
    251. 

  251. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-background_bold.svg</a></small>
    252. 

  252. 

  253.         </div>
    254. 

  254.         <div id="acquisition-fa80_datatype-figures_desc-zoomed_echo-4_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    255. 

  255. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
    256. 

  256. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-zoomed_bold.svg" style="width: 100%" />
    257. 

  257. </div>
    258. 

  258. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-zoomed_bold.svg</a></small>
    259. 

  259. 

  260.         </div>
    261. 

  261.         <div id="acquisition-fa80_datatype-figures_desc-carpet_echo-4_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    262. 

  262. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p>                    <div class="reportlet">
    263. 

  263. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-carpet_bold.svg" style="width: 100%" />
    264. 

  264. </div>
    265. 

  265. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-carpet_bold.svg</a></small>
    266. 

  266. 

  267.         </div>
    268. 

  268.     </div>
    269. 

  269.     <div id="Extended echo-wise reports" class="mt-5">
    270. 

  270.     <h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
    271. 

  271.         <div id="acquisition-fa80_datatype-figures_desc-mean_echo-1_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    272. 

  272. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p>                    <div class="reportlet">
    273. 

  273. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-mean_bold.svg" style="width: 100%" />
    274. 

  274. </div>
    275. 

  275. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_desc-mean_bold.svg</a></small>
    276. 

  276. 

  277.         </div>
    278. 

  278.         <div id="acquisition-fa80_datatype-figures_desc-mean_echo-2_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    279. 

  279. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p>                    <div class="reportlet">
    280. 

  280. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-mean_bold.svg" style="width: 100%" />
    281. 

  281. </div>
    282. 

  282. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-2_desc-mean_bold.svg</a></small>
    283. 

  283. 

  284.         </div>
    285. 

  285.         <div id="acquisition-fa80_datatype-figures_desc-mean_echo-3_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    286. 

  286. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p>                    <div class="reportlet">
    287. 

  287. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-mean_bold.svg" style="width: 100%" />
    288. 

  288. </div>
    289. 

  289. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-3_desc-mean_bold.svg</a></small>
    290. 

  290. 

  291.         </div>
    292. 

  292.         <div id="acquisition-fa80_datatype-figures_desc-mean_echo-4_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    293. 

  293. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p>                    <div class="reportlet">
    294. 

  294. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-mean_bold.svg" style="width: 100%" />
    295. 

  295. </div>
    296. 

  296. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_echo-4_desc-mean_bold.svg</a></small>
    297. 

  297. 

  298.         </div>
    299. 

  299.     </div>
    300. 

  300.     <div id="Extended reports shared across echos" class="mt-5">
    301. 

  301.     <h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
    302. 

  302.         <div id="acquisition-fa80_datatype-figures_desc-brainmask_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    303. 

  303. <h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p>                    <div class="reportlet">
    304. 

  304. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-brainmask_bold.svg" style="width: 100%" />
    305. 

  305. </div>
    306. 

  306. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-brainmask_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-brainmask_bold.svg</a></small>
    307. 

  307. 

  308.         </div>
    309. 

  309.         <div id="acquisition-fa80_datatype-figures_desc-norm_session-pilot005_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
    310. 

  310. <h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p>                    <div class="reportlet">
    311. 

  311. <object class="svg-reportlet" type="image/svg+xml" data="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-norm_bold.svg" style="">
    312. 

  312. Problem loading figure sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
    313. 

  313. </div>
    314. 

  314. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-norm_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot005_task-rest_acq-fa80_desc-norm_bold.svg</a></small>
    315. 

  315. 

  316.         </div>
    317. 

  317.     </div>
    318. 

  318.     <div id="About" class="mt-5">
    319. 

  319.     <h1 class="sub-report-title pt-5 ps-4">About</h1>
    320. 

  320.         <div id="errors" class="ps-4 pe-4 mb-2">
    321. 

  321. <h2 class="sub-report-group mt-4">Errors</h2>                    <p class="alert alert-success" role="alert">No errors to report!</p>
    322. 

  322.         </div>
    323. 

  323.         <div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
    324. 

  324. <h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
    325. 

  325. reconstructing the provenance of the corresponding derivatives.
    326. 

  326. </p>                    <div class="accordion accordion-flush" id="about-metadata">
    327. 

  327. 

  328. 

  329.   <div class="accordion-item">
    330. 

  330.     <h2 class="accordion-header" id="about-metadata-0">
    331. 

  331.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
    332. 

  332.         Provenance Information
    333. 

  333.       </button>
    334. 

  334.     </h2>
    335. 

  335.     <div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
    336. 

  336.       <div class="accordion-body metadata-table">
    337. 

  337.       <table id="about-metadata-table-0" class="table table-sm table-striped">
    338. 

  338. <tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
    339. 

  339. <tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-pilot005/func/sub-001_ses-pilot005_task-rest_acq-fa80_echo-1_bold.nii.gz</td></tr>
    340. 

  340. <tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
    341. 

  341. <tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
    342. 

  342. <tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
    343. 

  343. <tr><td colspan=2>md5sum</td><td>f9fdb32bef75a6a912f90e24e8a84a96</td></tr>
    344. 

  344. </table>
    345. 

  345. 

  346.       </div>
    347. 

  347.     </div>
    348. 

  348.   </div>
    349. 

  349. 

  350. 

  351.   <div class="accordion-item">
    352. 

  352.     <h2 class="accordion-header" id="about-metadata-1">
    353. 

  353.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
    354. 

  354.         Dataset Information
    355. 

  355.       </button>
    356. 

  356.     </h2>
    357. 

  357.     <div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
    358. 

  358.       <div class="accordion-body metadata-table">
    359. 

  359.       <table id="about-metadata-table-1" class="table table-sm table-striped">
    360. 

  360. <tr><td>AcquisitionDuration</td><td>265.442</td></tr>
    361. 

  361. <tr><td>AcquisitionMatrixPE</td><td>108</td></tr>
    362. 

  362. <tr><td>AcquisitionNumber</td><td>1</td></tr>
    363. 

  363. <tr><td>AcquisitionTime</td><td>16:50:4.287500</td></tr>
    364. 

  364. <tr><td>B0FieldSource</td><td>['pilot005pepolarbold', 'pilot005phasediff']</td></tr>
    365. 

  365. <tr><td>BandwidthPerPixelPhaseEncode</td><td>34.294</td></tr>
    366. 

  366. <tr><td>BaseResolution</td><td>108</td></tr>
    367. 

  367. <tr><td>BodyPartExamined</td><td>BRAIN</td></tr>
    368. 

  368. <tr><td>CoilCombinationMethod</td><td>Sum of Squares</td></tr>
    369. 

  369. <tr><td>CoilString</td><td>HeadNeck_64</td></tr>
    370. 

  370. <tr><td>ConversionSoftware</td><td>dcm2niix</td></tr>
    371. 

  371. <tr><td>ConversionSoftwareVersion</td><td>v1.0.20220720</td></tr>
    372. 

  372. <tr><td>DerivedVendorReportedEchoSpacing</td><td>0.000539993</td></tr>
    373. 

  373. <tr><td>DeviceSerialNumber</td><td>67014</td></tr>
    374. 

  374. <tr><td>DwellTime</td><td>2e-06</td></tr>
    375. 

  375. <tr><td>EchoNumber</td><td>1</td></tr>
    376. 

  376. <tr><td>EchoTime</td><td>0.0126</td></tr>
    377. 

  377. <tr><td>EchoTrainLength</td><td>40</td></tr>
    378. 

  378. <tr><td>EffectiveEchoSpacing</td><td>0.000269996</td></tr>
    379. 

  379. <tr><td>FlipAngle</td><td>80</td></tr>
    380. 

  380. <tr><td>HeudiconvVersion</td><td>1.0.0</td></tr>
    381. 

  381. <tr><td>ImageComments</td><td>Unaliased MB4/PE4/LB</td></tr>
    382. 

  382. <tr><td>ImageOrientationPatientDICOM</td><td>[0.998233, 0.0495591, 0.0327836, -0.0484724, 0.998274, -0.0331517]</td></tr>
    383. 

  383. <tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'FMRI', 'NONE']</td></tr>
    384. 

  384. <tr><td>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'TE1', 'DIS2D']</td></tr>
    385. 

  385. <tr><td>ImagingFrequency</td><td>123.248</td></tr>
    386. 

  386. <tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
    387. 

  387. <tr><td>InstitutionAddress</td><td>Rue du Bugnon 21,Lausanne,District,CH,1011</td></tr>
    388. 

  388. <tr><td>InstitutionName</td><td>CHUV</td></tr>
    389. 

  389. <tr><td>MRAcquisitionType</td><td>2D</td></tr>
    390. 

  390. <tr><td>MTState</td><td>False</td></tr>
    391. 

  391. <tr><td>MagneticFieldStrength</td><td>3</td></tr>
    392. 

  392. <tr><td>Manufacturer</td><td>Siemens</td></tr>
    393. 

  393. <tr><td>ManufacturersModelName</td><td>MAGNETOM Prisma Fit</td></tr>
    394. 

  394. <tr><td>MatrixCoilMode</td><td>GRAPPA</td></tr>
    395. 

  395. <tr><td>Modality</td><td>MR</td></tr>
    396. 

  396. <tr><td>MultibandAccelerationFactor</td><td>4</td></tr>
    397. 

  397. <tr><td>NonlinearGradientCorrection</td><td>True</td></tr>
    398. 

  398. <tr><td>ParallelAcquisitionTechnique</td><td>GRAPPA</td></tr>
    399. 

  399. <tr><td>ParallelReductionFactorInPlane</td><td>2</td></tr>
    400. 

  400. <tr><td>PartialFourier</td><td>0.75</td></tr>
    401. 

  401. <tr><td>PartialFourierDirection</td><td>PHASE</td></tr>
    402. 

  402. <tr><td>PatientPosition</td><td>HFS</td></tr>
    403. 

  403. <tr><td>PercentPhaseFOV</td><td>100</td></tr>
    404. 

  404. <tr><td>PercentSampling</td><td>100</td></tr>
    405. 

  405. <tr><td>PhaseEncodingDirection</td><td>j-</td></tr>
    406. 

  406. <tr><td>PhaseResolution</td><td>1</td></tr>
    407. 

  407. <tr><td>PixelBandwidth</td><td>2315</td></tr>
    408. 

  408. <tr><td>ProcedureStepDescription</td><td>RESEARCH Oscar</td></tr>
    409. 

  409. <tr><td>ProtocolName</td><td>cmrr_mbep2d_bold_me4_sms4_fa80</td></tr>
    410. 

  410. <tr><td>PulseSequenceDetails</td><td>%CustomerSeq%\cmrr_mbep2d_bold</td></tr>
    411. 

  411. <tr><td>PulseSequenceName</td><td>epfid2d4_108</td></tr>
    412. 

  412. <tr><td>ReceiveCoilActiveElements</td><td>HC1-6</td></tr>
    413. 

  413. <tr><td>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
    414. 

  414. <tr><td>ReconMatrixPE</td><td>108</td></tr>
    415. 

  415. <tr><td>RefLinesPE</td><td>26</td></tr>
    416. 

  416. <tr><td>RepetitionTime</td><td>1.573</td></tr>
    417. 

  417. <tr><td>ScanOptions</td><td>PFP\FS</td></tr>
    418. 

  418. <tr><td>ScanningSequence</td><td>EP</td></tr>
    419. 

  419. <tr><td>SequenceVariant</td><td>SK\SS</td></tr>
    420. 

  420. <tr><td>SeriesDescription</td><td>cmrr_mbep2d_bold_me4_sms4_fa80</td></tr>
    421. 

  421. <tr><td>SeriesNumber</td><td>5</td></tr>
    422. 

  422. <tr><td>ShimSetting</td><td>[8230, -5624, -6018, 699, -79, -124, 41, 44]</td></tr>
    423. 

  423. <tr><td>SliceThickness</td><td>2</td></tr>
    424. 

  424. <tr><td>SliceTiming</td><td>[0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.4425, 0.775, 1.1075, 1.44, 0.22, 0.5525, 0.8875, 1.22, 0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.4425, 0.775, 1.1075, 1.44, 0.22, 0.5525, 0.8875, 1.22, 0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.4425, 0.775, 1.1075, 1.44, 0.22, 0.5525, 0.8875, 1.22, 0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.4425, 0.775, 1.1075, 1.44, 0.22, 0.5525, 0.8875, 1.22]</td></tr>
    425. 

  425. <tr><td>SoftwareVersions</td><td>syngo MR XA30</td></tr>
    426. 

  426. <tr><td>SpacingBetweenSlices</td><td>2</td></tr>
    427. 

  427. <tr><td>StationName</td><td>LRG10884</td></tr>
    428. 

  428. <tr><td>TaskName</td><td>rest</td></tr>
    429. 

  429. <tr><td>TotalReadoutTime</td><td>0.0288896</td></tr>
    430. 

  430. <tr><td>TxRefAmp</td><td>243.446</td></tr>
    431. 

  431. <tr><td>WipMemBlock</td><td>f139d944-8f4a-4b5a-8ade-e062df939652||Sequence: R017 nxva30a/master r/d34922cc2+; Jun 27 2022 13:20:16 by eja</td></tr>
    432. 

  432. </table>
    433. 

  433. 

  434.       </div>
    435. 

  435.     </div>
    436. 

  436.   </div>
    437. 

  437. 

  438. 

  439.   <div class="accordion-item">
    440. 

  440.     <h2 class="accordion-header" id="about-metadata-2">
    441. 

  441.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
    442. 

  442.         Extracted Image quality metrics (IQMs)
    443. 

  443.       </button>
    444. 

  444.     </h2>
    445. 

  445.     <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
    446. 

  446.       <div class="accordion-body metadata-table">
    447. 

  447.       <table id="about-metadata-table-2" class="table table-sm table-striped">
    448. 

  448. <tr><td colspan=3>aor</td><td>[0.0024814666666666666, 0.0021896, 0.0019328000000000001, 0.0015955333333333335]</td></tr>
    449. 

  449. <tr><td colspan=3>aqi</td><td>[0.007397814133333333, 0.007642447333333333, 0.011515984933333332, 0.021499726666666667]</td></tr>
    450. 

  450. <tr><td colspan=3>dummy_trs</td><td>0</td></tr>
    451. 

  451. <tr><td>dvars</td><td colspan=2>nstd</td><td>35.79051692389261</td></tr>
    452. 

  452. <tr><td>dvars</td><td colspan=2>std</td><td>1.1112718473825502</td></tr>
    453. 

  453. <tr><td>dvars</td><td colspan=2>vstd</td><td>1.1021657981879198</td></tr>
    454. 

  454. <tr><td colspan=3>efc</td><td>0.5754</td></tr>
    455. 

  455. <tr><td colspan=3>fber</td><td>773.245</td></tr>
    456. 

  456. <tr><td>fd</td><td colspan=2>mean</td><td>0.0730070143279597</td></tr>
    457. 

  457. <tr><td>fd</td><td colspan=2>num</td><td>0</td></tr>
    458. 

  458. <tr><td>fd</td><td colspan=2>perc</td><td>0.0</td></tr>
    459. 

  459. <tr><td>fwhm</td><td colspan=2>avg</td><td>3.793505</td></tr>
    460. 

  460. <tr><td>fwhm</td><td colspan=2>x</td><td>3.3893</td></tr>
    461. 

  461. <tr><td>fwhm</td><td colspan=2>y</td><td>4.00563</td></tr>
    462. 

  462. <tr><td>fwhm</td><td colspan=2>z</td><td>3.985585</td></tr>
    463. 

  463. <tr><td colspan=3>gcor</td><td>[0.0055447, 0.00823127, 0.00743967, 0.00560684]</td></tr>
    464. 

  464. <tr><td>gsr</td><td colspan=2>x</td><td>0.0040372759103775024</td></tr>
    465. 

  465. <tr><td>gsr</td><td colspan=2>y</td><td>0.10499279946088791</td></tr>
    466. 

  466. <tr><td>size</td><td colspan=2>t</td><td>150</td></tr>
    467. 

  467. <tr><td>size</td><td colspan=2>x</td><td>108</td></tr>
    468. 

  468. <tr><td>size</td><td colspan=2>y</td><td>108</td></tr>
    469. 

  469. <tr><td>size</td><td colspan=2>z</td><td>56</td></tr>
    470. 

  470. <tr><td colspan=3>snr</td><td>2.6703579512920075</td></tr>
    471. 

  471. <tr><td>spacing</td><td colspan=2>tr</td><td>1.5729999542236328</td></tr>
    472. 

  472. <tr><td>spacing</td><td colspan=2>x</td><td>2.0</td></tr>
    473. 

  473. <tr><td>spacing</td><td colspan=2>y</td><td>2.0</td></tr>
    474. 

  474. <tr><td>spacing</td><td colspan=2>z</td><td>2.0</td></tr>
    475. 

  475. <tr><td>summary</td><td>bg</td><td>k</td><td>10.5147</td></tr>
    476. 

  476. <tr><td>summary</td><td>bg</td><td>mad</td><td>18.3348</td></tr>
    477. 

  477. <tr><td>summary</td><td>bg</td><td>mean</td><td>122.9455</td></tr>
    478. 

  478. <tr><td>summary</td><td>bg</td><td>median</td><td>30.0</td></tr>
    479. 

  479. <tr><td>summary</td><td>bg</td><td>n</td><td>490592.0</td></tr>
    480. 

  480. <tr><td>summary</td><td>bg</td><td>p05</td><td>4.0</td></tr>
    481. 

  481. <tr><td>summary</td><td>bg</td><td>p95</td><td>660.0</td></tr>
    482. 

  482. <tr><td>summary</td><td>bg</td><td>stdv</td><td>230.6997</td></tr>
    483. 

  483. <tr><td>summary</td><td>fg</td><td>k</td><td>0.8717</td></tr>
    484. 

  484. <tr><td>summary</td><td>fg</td><td>mad</td><td>298.601</td></tr>
    485. 

  485. <tr><td>summary</td><td>fg</td><td>mean</td><td>869.5953</td></tr>
    486. 

  486. <tr><td>summary</td><td>fg</td><td>median</td><td>835.0</td></tr>
    487. 

  487. <tr><td>summary</td><td>fg</td><td>n</td><td>162592.0</td></tr>
    488. 

  488. <tr><td>summary</td><td>fg</td><td>p05</td><td>429.0</td></tr>
    489. 

  489. <tr><td>summary</td><td>fg</td><td>p95</td><td>1423.0</td></tr>
    490. 

  490. <tr><td>summary</td><td>fg</td><td>stdv</td><td>312.6912</td></tr>
    491. 

  491. <tr><td colspan=3>tsnr</td><td>43.193156314315274</td></tr>
    492. 

  492. </table>
    493. 

  493. 

  494.       </div>
    495. 

  495.     </div>
    496. 

  496.   </div>
    497. 

  497. 

  498. </div>
    499. 

  499.         </div>
    500. 

  500.     </div>
    501. 

  501. 

  502. <div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%;">
    503. 

  503. <div class="card-header m-0">
    504. 

  504.     Rating widget
    505. 

  505.     <button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
    506. 

  506. </div>
    507. 

  507. <div class="card-body">
    508. 

  508. <div class="accordion">
    509. 

  509.   <div class="accordion-item">
    510. 

  510.     <h2 class="accordion-header" id="qcslider-head">
    511. 

  511.       <button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
    512. 

  512.     </h2>
    513. 

  513.     <div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
    514. 

  514.       <div class="accordion-body">
    515. 

  515.         <input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
    516. 

  516.         <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
    517. 

  517.             <li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
    518. 

  518.             <li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
    519. 

  519.             <li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
    520. 

  520.             <li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
    521. 

  521.         </ul>
    522. 

  522.       </div>
    523. 

  523.     </div>
    524. 

  524.   </div>
    525. 

  525. 

  526.   <div class="accordion-item">
    527. 

  527.     <h2 class="accordion-header" id="qcartifacts-head">
    528. 

  528.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
    529. 

  529.         Record specific artifacts
    530. 

  530.       </button>
    531. 

  531.     </h2>
    532. 

  532.     <div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
    533. 

  533.       <div class="accordion-body">
    534. 

  534.         <fieldset id="qcartifacts-group" class="form-group">
    535. 

  535.             <div class="form-check form-switch small">
    536. 

  536.                 <input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
    537. 

  537.                 <label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
    538. 

  538.             </div>
    539. 

  539.             <div class="form-check form-switch small">
    540. 

  540.                 <input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
    541. 

  541.                 <label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
    542. 

  542.             </div>
    543. 

  543.             <div class="form-check form-switch small">
    544. 

  544.                 <input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
    545. 

  545.                 <label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
    546. 

  546.             </div>
    547. 

  547.             <div class="form-check form-switch small">
    548. 

  548.                 <input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
    549. 

  549.                 <label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
    550. 

  550.             </div>
    551. 

  551.             <div class="form-check form-switch small">
    552. 

  552.                 <input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
    553. 

  553.                 <label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
    554. 

  554.             </div>
    555. 

  555.             <div class="form-check form-switch small">
    556. 

  556.                 <input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
    557. 

  557.                 <label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
    558. 

  558.             </div>
    559. 

  559.             <div class="form-check form-switch small">
    560. 

  560.                 <input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
    561. 

  561.                 <label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
    562. 

  562.             </div>
    563. 

  563.             <div class="form-check form-switch small">
    564. 

  564.                 <input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
    565. 

  565.                 <label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
    566. 

  566.             </div>
    567. 

  567.             <div class="form-check form-switch small">
    568. 

  568.                 <input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
    569. 

  569.                 <label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
    570. 

  570.             </div>
    571. 

  571.             <div class="form-check form-switch small">
    572. 

  572.                 <input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
    573. 

  573.                 <label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
    574. 

  574.             </div>
    575. 

  575.             <div class="form-check form-switch small">
    576. 

  576.                 <input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
    577. 

  577.                 <label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
    578. 

  578.             </div>
    579. 

  579.             <div class="form-check form-switch small">
    580. 

  580.                 <input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
    581. 

  581.                 <label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
    582. 

  582.             </div>
    583. 

  583.             <div class="form-check form-switch small">
    584. 

  584.                 <input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
    585. 

  585.                 <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
    586. 

  586.             </div>
    587. 

  587.             <div class="form-check form-switch small">
    588. 

  588.                 <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
    589. 

  589.                 <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
    590. 

  590.             </div>
    591. 

  591.         </fieldset>
    592. 

  592.       </div> <!-- accordion-body -->
    593. 

  593.     </div> <!-- accordion-collapse -->
    594. 

  594.   </div> <!-- accordion-item -->
    595. 

  595.   <div class="accordion-item">
    596. 

  596.     <h2 class="accordion-header" id="qcextra-head">
    597. 

  597.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
    598. 

  598.         Extra details
    599. 

  599.       </button>
    600. 

  600.     </h2>
    601. 

  601.     <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
    602. 

  602.       <div class="accordion-body">
    603. 

  603.         <div class="input-group">
    604. 

  604.           <span class="input-group-text">Comments</span>
    605. 

  605.           <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
    606. 

  606.         </div>
    607. 

  607. 

  608.         <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
    609. 

  609.         <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
    610. 

  610.         <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
    611. 

  611.             <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
    612. 

  612.             <li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
    613. 

  613.         </ul>
    614. 

  614.        </div> <!-- accordion-body -->
    615. 

  615.     </div> <!-- accordion-collapse -->
    616. 

  616.   </div> <!-- accordion-item -->
    617. 

  617. </div>
    618. 

  618. <div style="margin-top: 10px">
    619. 

  619. <a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
    620. 

  620. </div>
    621. 

  621. <script type="text/javascript">
    622. 

  622. var MINIMUM_RATING_TIME = 10
    623. 

  623. $('#qcslider').on('input', function() {
    624. 

  624. 

  625.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    626. 

  626.         $('#btn-download').removeClass('disabled');
    627. 

  627.         $('#btn-download').removeAttr('aria-disabled');
    628. 

  628.         $('#btn-post').removeAttr('disabled');
    629. 

  629.     };
    630. 

  630. 

  631.     $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
    632. 

  632.         return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
    633. 

  633.     });
    634. 

  634.     $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
    635. 

  635.         return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
    636. 

  636.     });
    637. 

  637. 

  638.     if ( $(this).val() < 1.5 ) {
    639. 

  639.         $('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
    640. 

  640.     } else if ( $(this).val() > 3.5 ) {
    641. 

  641.         $('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
    642. 

  642.     } else if ( $(this).val() < 2.5 ) {
    643. 

  643.         $('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
    644. 

  644.     } else {
    645. 

  645.         $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
    646. 

  646.     };
    647. 

  647. 

  648.     var payload = read_form();
    649. 

  649. });
    650. 

  650. 

  651. $('#qcextra-confidence').on('input', function() {
    652. 

  652.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    653. 

  653.         $('#btn-download').removeClass('disabled');
    654. 

  654.         $('#btn-download').removeAttr('aria-disabled');
    655. 

  655.         $('#btn-post').removeAttr('disabled');
    656. 

  656.     };
    657. 

  657. 

  658.     $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
    659. 

  659.         return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
    660. 

  660.     });
    661. 

  661.     $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
    662. 

  662.         return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
    663. 

  663.     });
    664. 

  664. 

  665.     if ( $(this).val() < 2.0 ) {
    666. 

  666.         $('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
    667. 

  667.     } else {
    668. 

  668.         $('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
    669. 

  669.     };
    670. 

  670. 

  671.     var payload = read_form();
    672. 

  672. });
    673. 

  673. 

  674. 

  675. $('#qcextra-comments').bind('input propertychange', function() {
    676. 

  676.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    677. 

  677.         $('#btn-download').removeClass('disabled');
    678. 

  678.         $('#btn-download').removeAttr('aria-disabled');
    679. 

  679.         $('#btn-post').removeAttr('disabled');
    680. 

  680.     };
    681. 

  681. });
    682. 

  682. 

  683. $( '#btn-post' ).click( function() {
    684. 

  684.     var payload = read_form();
    685. 

  685.     var md5sum = "unspecified";
    686. 

  686.     var params = {
    687. 

  687.         'rating': payload['rating'],
    688. 

  688.         'md5sum': md5sum,
    689. 

  689.         'name': "",
    690. 

  690.         'comment': JSON.stringify(payload['artifacts'])
    691. 

  691.     };
    692. 

  692. 

  693.     // disable development releases
    694. 

  694.     var authorization = $(this).val();
    695. 

  695.     var ratingReq = new XMLHttpRequest();
    696. 

  696.     ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
    697. 

  697.     ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
    698. 

  698.     ratingReq.setRequestHeader("Authorization", authorization);
    699. 

  699.     ratingReq.onload = function () {
    700. 

  700.         status = ratingReq.status;
    701. 

  701.         $('#btn-post').removeClass('btn-primary');
    702. 

  702.         $('#btn-post').attr('disabled', true);
    703. 

  703.         $('#btn-post').attr('aria-disabled', true);
    704. 

  704.         $('#btn-post').prop('disabled');
    705. 

  705.         $('#btn-post').addClass('disabled');
    706. 

  706.         $('#btn-post').removeClass('active');
    707. 

  707.         if (status === "201") {
    708. 

  708.             $('#btn-post').addClass('btn-success');
    709. 

  709.             $('#btn-post').html('Posted!');
    710. 

  710.         } else {
    711. 

  711.             $('#btn-post').addClass('btn-danger');
    712. 

  712.             $('#btn-post').html('Failed');
    713. 

  713.         };
    714. 

  714.     };
    715. 

  715.     ratingReq.send(JSON.stringify(params));
    716. 

  716. });
    717. 

  717. 

  718. $( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
    719. 

  719.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    720. 

  720.         $('#btn-download').removeClass('disabled');
    721. 

  721.         $('#btn-download').removeAttr('aria-disabled');
    722. 

  722.         $('#btn-post').removeAttr('disabled');
    723. 

  723.     };
    724. 

  724.     
    725. 

  725.     var payload = read_form();
    726. 

  726. });
    727. 

  727. 

  728. $( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
    729. 

  729.     toggle_rating();
    730. 

  730. });
    731. 

  731. </script>
    732. 

  732. </div>
    733. 

  733. 

  734. <script type="text/javascript">
    735. 

  735. function toggle(id) {
    736. 

  736.     var element = document.getElementById(id);
    737. 

  737.     if(element.style.display == 'block')
    738. 

  738.         element.style.display = 'none';
    739. 

  739.     else
    740. 

  740.         element.style.display = 'block';
    741. 

  741. }
    742. 

  742. </script>
    743. 

  743. </body>
    744. 

  744. </html>
    745.