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  101. <li><a class="dropdown-item" href="#datatype-figures_desc-stdev_echo-1_session-pilot004_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">1</span>.</a></li>
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  108. <a class="nav-link dropdown-toggle" id="navbarExtended echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Extended echo-wise reports">
  109. Extended echo-wise reports
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  112. <li><a class="dropdown-item" href="#datatype-figures_desc-mean_echo-1_session-pilot004_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">1</span>.</a></li>
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  141. <div id="Basic echo-wise reports" class="mt-5">
  142. <h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
  143. <div id="datatype-figures_desc-stdev_echo-1_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  144. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
  145. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-stdev_bold.svg" style="width: 100%" />
  146. </div>
  147. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-stdev_bold.svg</a></small>
  148. </div>
  149. <div id="datatype-figures_desc-background_echo-1_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  150. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
  151. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-background_bold.svg" style="width: 100%" />
  152. </div>
  153. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-background_bold.svg</a></small>
  154. </div>
  155. <div id="datatype-figures_desc-zoomed_echo-1_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  156. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
  157. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-zoomed_bold.svg" style="width: 100%" />
  158. </div>
  159. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-zoomed_bold.svg</a></small>
  160. </div>
  161. <div id="datatype-figures_desc-carpet_echo-1_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  162. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
  163. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-carpet_bold.svg" style="width: 100%" />
  164. </div>
  165. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-carpet_bold.svg</a></small>
  166. </div>
  167. <div id="datatype-figures_desc-stdev_echo-2_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  168. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
  169. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-stdev_bold.svg" style="width: 100%" />
  170. </div>
  171. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-stdev_bold.svg</a></small>
  172. </div>
  173. <div id="datatype-figures_desc-background_echo-2_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  174. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
  175. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-background_bold.svg" style="width: 100%" />
  176. </div>
  177. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-background_bold.svg</a></small>
  178. </div>
  179. <div id="datatype-figures_desc-zoomed_echo-2_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  180. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
  181. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-zoomed_bold.svg" style="width: 100%" />
  182. </div>
  183. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-zoomed_bold.svg</a></small>
  184. </div>
  185. <div id="datatype-figures_desc-carpet_echo-2_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  186. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
  187. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-carpet_bold.svg" style="width: 100%" />
  188. </div>
  189. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-carpet_bold.svg</a></small>
  190. </div>
  191. <div id="datatype-figures_desc-stdev_echo-3_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  192. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
  193. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-stdev_bold.svg" style="width: 100%" />
  194. </div>
  195. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-stdev_bold.svg</a></small>
  196. </div>
  197. <div id="datatype-figures_desc-background_echo-3_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  198. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
  199. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-background_bold.svg" style="width: 100%" />
  200. </div>
  201. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-background_bold.svg</a></small>
  202. </div>
  203. <div id="datatype-figures_desc-zoomed_echo-3_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  204. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
  205. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-zoomed_bold.svg" style="width: 100%" />
  206. </div>
  207. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-zoomed_bold.svg</a></small>
  208. </div>
  209. <div id="datatype-figures_desc-carpet_echo-3_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  210. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
  211. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-carpet_bold.svg" style="width: 100%" />
  212. </div>
  213. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-carpet_bold.svg</a></small>
  214. </div>
  215. <div id="datatype-figures_desc-stdev_echo-4_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  216. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
  217. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-stdev_bold.svg" style="width: 100%" />
  218. </div>
  219. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-stdev_bold.svg</a></small>
  220. </div>
  221. <div id="datatype-figures_desc-background_echo-4_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  222. <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
  223. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-background_bold.svg" style="width: 100%" />
  224. </div>
  225. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-background_bold.svg</a></small>
  226. </div>
  227. <div id="datatype-figures_desc-zoomed_echo-4_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  228. <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
  229. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-zoomed_bold.svg" style="width: 100%" />
  230. </div>
  231. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-zoomed_bold.svg</a></small>
  232. </div>
  233. <div id="datatype-figures_desc-carpet_echo-4_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  234. <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called &laquo;carpetplot&raquo; may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
  235. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-carpet_bold.svg" style="width: 100%" />
  236. </div>
  237. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-carpet_bold.svg</a></small>
  238. </div>
  239. </div>
  240. <div id="Extended echo-wise reports" class="mt-5">
  241. <h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
  242. <div id="datatype-figures_desc-mean_echo-1_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  243. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
  244. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-mean_bold.svg" style="width: 100%" />
  245. </div>
  246. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-1_desc-mean_bold.svg</a></small>
  247. </div>
  248. <div id="datatype-figures_desc-mean_echo-2_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  249. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
  250. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-mean_bold.svg" style="width: 100%" />
  251. </div>
  252. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-2_desc-mean_bold.svg</a></small>
  253. </div>
  254. <div id="datatype-figures_desc-mean_echo-3_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  255. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
  256. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-mean_bold.svg" style="width: 100%" />
  257. </div>
  258. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-3_desc-mean_bold.svg</a></small>
  259. </div>
  260. <div id="datatype-figures_desc-mean_echo-4_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  261. <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
  262. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-mean_bold.svg" style="width: 100%" />
  263. </div>
  264. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_echo-4_desc-mean_bold.svg</a></small>
  265. </div>
  266. </div>
  267. <div id="Extended reports shared across echos" class="mt-5">
  268. <h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
  269. <div id="datatype-figures_desc-brainmask_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  270. <h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
  271. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot004_task-qct_desc-brainmask_bold.svg" style="width: 100%" />
  272. </div>
  273. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_desc-brainmask_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_desc-brainmask_bold.svg</a></small>
  274. </div>
  275. <div id="datatype-figures_desc-norm_session-pilot004_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
  276. <h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
  277. <object class="svg-reportlet" type="image/svg+xml" data="./sub-001/figures/sub-001_ses-pilot004_task-qct_desc-norm_bold.svg" style="">
  278. Problem loading figure sub-001/figures/sub-001_ses-pilot004_task-qct_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
  279. </div>
  280. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot004_task-qct_desc-norm_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot004_task-qct_desc-norm_bold.svg</a></small>
  281. </div>
  282. </div>
  283. <div id="About" class="mt-5">
  284. <h1 class="sub-report-title pt-5 ps-4">About</h1>
  285. <div id="errors" class="ps-4 pe-4 mb-2">
  286. <h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
  287. </div>
  288. <div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
  289. <h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
  290. reconstructing the provenance of the corresponding derivatives.
  291. </p> <div class="accordion accordion-flush" id="about-metadata">
  292. <div class="accordion-item">
  293. <h2 class="accordion-header" id="about-metadata-0">
  294. <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
  295. Provenance Information
  296. </button>
  297. </h2>
  298. <div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
  299. <div class="accordion-body metadata-table">
  300. <table id="about-metadata-table-0" class="table table-sm table-striped">
  301. <tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
  302. <tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-pilot004/func/sub-001_ses-pilot004_task-qct_echo-1_bold.nii.gz</td></tr>
  303. <tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
  304. <tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
  305. <tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
  306. <tr><td colspan=2>md5sum</td><td>cfdafc19a19fccd6c728b36dc58586d1</td></tr>
  307. </table>
  308. </div>
  309. </div>
  310. </div>
  311. <div class="accordion-item">
  312. <h2 class="accordion-header" id="about-metadata-1">
  313. <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
  314. Dataset Information
  315. </button>
  316. </h2>
  317. <div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
  318. <div class="accordion-body metadata-table">
  319. <table id="about-metadata-table-1" class="table table-sm table-striped">
  320. <tr><td>AcquisitionDuration</td><td>265.442</td></tr>
  321. <tr><td>AcquisitionMatrixPE</td><td>108</td></tr>
  322. <tr><td>AcquisitionTime</td><td>15:14:21.812500</td></tr>
  323. <tr><td>B0FieldSource</td><td>['pilot004pepolarbold', 'pilot004phasediff']</td></tr>
  324. <tr><td>BandwidthPerPixelPhaseEncode</td><td>34.294</td></tr>
  325. <tr><td>BaseResolution</td><td>108</td></tr>
  326. <tr><td>DerivedVendorReportedEchoSpacing</td><td>0.000539993</td></tr>
  327. <tr><td>DwellTime</td><td>2e-06</td></tr>
  328. <tr><td>EchoNumber</td><td>1</td></tr>
  329. <tr><td>EchoTime</td><td>0.0126</td></tr>
  330. <tr><td>EchoTrainLength</td><td>40</td></tr>
  331. <tr><td>EffectiveEchoSpacing</td><td>0.000269996</td></tr>
  332. <tr><td>FlipAngle</td><td>90</td></tr>
  333. <tr><td>ImageOrientationPatientDICOM</td><td>[0.999066, 0.0111462, 0.0417531, -0.0108114, 0.999908, -0.0082351]</td></tr>
  334. <tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'FMRI', 'NONE']</td></tr>
  335. <tr><td>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'TE1', 'DIS2D']</td></tr>
  336. <tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
  337. <tr><td>PercentPhaseFOV</td><td>100</td></tr>
  338. <tr><td>PhaseEncodingDirection</td><td>j-</td></tr>
  339. <tr><td>PixelBandwidth</td><td>2315</td></tr>
  340. <tr><td>ProtocolName</td><td>cmrr_mbep2d_bold_me4_sms4</td></tr>
  341. <tr><td>PulseSequenceName</td><td>epfid2d4_108</td></tr>
  342. <tr><td>ReceiveCoilActiveElements</td><td>HC1-6</td></tr>
  343. <tr><td>ReconMatrixPE</td><td>108</td></tr>
  344. <tr><td>RefLinesPE</td><td>26</td></tr>
  345. <tr><td>RepetitionTime</td><td>1.573</td></tr>
  346. <tr><td>SequenceVariant</td><td>SK\SS</td></tr>
  347. <tr><td>SeriesDescription</td><td>cmrr_mbep2d_bold_me4_sms4</td></tr>
  348. <tr><td>SeriesNumber</td><td>37</td></tr>
  349. <tr><td>ShimSetting</td><td>[8223, -5655, -6043, 646, -100, -141, -6, 42]</td></tr>
  350. <tr><td>SliceThickness</td><td>2</td></tr>
  351. <tr><td>SliceTiming</td><td>[0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.445, 0.7775, 1.11, 1.4425, 0.2225, 0.555, 0.8875, 1.22, 0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.445, 0.7775, 1.11, 1.4425, 0.2225, 0.555, 0.8875, 1.22, 0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.445, 0.7775, 1.11, 1.4425, 0.2225, 0.555, 0.8875, 1.22, 0, 0.3325, 0.665, 0.9975, 1.33, 0.11, 0.445, 0.7775, 1.11, 1.4425, 0.2225, 0.555, 0.8875, 1.22]</td></tr>
  352. <tr><td>SpacingBetweenSlices</td><td>2</td></tr>
  353. <tr><td>TotalReadoutTime</td><td>0.0288896</td></tr>
  354. <tr><td>TxRefAmp</td><td>251.192</td></tr>
  355. <tr><td>WipMemBlock</td><td>85ca4343-ac91-417e-bf52-d9ac1f4f1e72||Sequence: R017 nxva30a/master r/d34922cc2+; Jun 27 2022 13:20:16 by eja</td></tr>
  356. </table>
  357. </div>
  358. </div>
  359. </div>
  360. <div class="accordion-item">
  361. <h2 class="accordion-header" id="about-metadata-2">
  362. <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
  363. Extracted Image quality metrics (IQMs)
  364. </button>
  365. </h2>
  366. <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
  367. <div class="accordion-body metadata-table">
  368. <table id="about-metadata-table-2" class="table table-sm table-striped">
  369. <tr><td colspan=3>aor</td><td>[0.0009212000000000002, 0.0008650666666666666, 0.0007616000000000002, 0.0009750666666666667]</td></tr>
  370. <tr><td colspan=3>aqi</td><td>[0.006528717666666666, 0.007993035199999998, 0.012994370000000002, 0.02463494]</td></tr>
  371. <tr><td colspan=3>dummy_trs</td><td>0</td></tr>
  372. <tr><td>dvars</td><td colspan=2>nstd</td><td>35.76570619677855</td></tr>
  373. <tr><td>dvars</td><td colspan=2>std</td><td>1.052228031812081</td></tr>
  374. <tr><td>dvars</td><td colspan=2>vstd</td><td>1.014340993825503</td></tr>
  375. <tr><td colspan=3>efc</td><td>0.5817</td></tr>
  376. <tr><td colspan=3>fber</td><td>695.4005</td></tr>
  377. <tr><td>fd</td><td colspan=2>mean</td><td>0.10295666612783164</td></tr>
  378. <tr><td>fd</td><td colspan=2>num</td><td>18</td></tr>
  379. <tr><td>fd</td><td colspan=2>perc</td><td>12.0</td></tr>
  380. <tr><td>fwhm</td><td colspan=2>avg</td><td>3.52462</td></tr>
  381. <tr><td>fwhm</td><td colspan=2>x</td><td>3.14532</td></tr>
  382. <tr><td>fwhm</td><td colspan=2>y</td><td>3.71908</td></tr>
  383. <tr><td>fwhm</td><td colspan=2>z</td><td>3.70946</td></tr>
  384. <tr><td colspan=3>gcor</td><td>[0.00488234, 0.005902, 0.00501779, 0.00363065]</td></tr>
  385. <tr><td>gsr</td><td colspan=2>x</td><td>0.0014519119868054986</td></tr>
  386. <tr><td>gsr</td><td colspan=2>y</td><td>0.10899196565151215</td></tr>
  387. <tr><td>size</td><td colspan=2>t</td><td>150</td></tr>
  388. <tr><td>size</td><td colspan=2>x</td><td>108</td></tr>
  389. <tr><td>size</td><td colspan=2>y</td><td>108</td></tr>
  390. <tr><td>size</td><td colspan=2>z</td><td>56</td></tr>
  391. <tr><td colspan=3>snr</td><td>2.723118952829157</td></tr>
  392. <tr><td>spacing</td><td colspan=2>tr</td><td>1.5729999542236328</td></tr>
  393. <tr><td>spacing</td><td colspan=2>x</td><td>2.0</td></tr>
  394. <tr><td>spacing</td><td colspan=2>y</td><td>2.0</td></tr>
  395. <tr><td>spacing</td><td colspan=2>z</td><td>2.0</td></tr>
  396. <tr><td>summary</td><td>bg</td><td>k</td><td>9.3907</td></tr>
  397. <tr><td>summary</td><td>bg</td><td>mad</td><td>18.3052</td></tr>
  398. <tr><td>summary</td><td>bg</td><td>mean</td><td>127.3077</td></tr>
  399. <tr><td>summary</td><td>bg</td><td>median</td><td>30.0</td></tr>
  400. <tr><td>summary</td><td>bg</td><td>n</td><td>490298.0</td></tr>
  401. <tr><td>summary</td><td>bg</td><td>p05</td><td>1.0</td></tr>
  402. <tr><td>summary</td><td>bg</td><td>p95</td><td>695.0</td></tr>
  403. <tr><td>summary</td><td>bg</td><td>stdv</td><td>238.8683</td></tr>
  404. <tr><td>summary</td><td>fg</td><td>k</td><td>0.3127</td></tr>
  405. <tr><td>summary</td><td>fg</td><td>mad</td><td>283.9282</td></tr>
  406. <tr><td>summary</td><td>fg</td><td>mean</td><td>825.2263</td></tr>
  407. <tr><td>summary</td><td>fg</td><td>median</td><td>797.0</td></tr>
  408. <tr><td>summary</td><td>fg</td><td>n</td><td>162886.0</td></tr>
  409. <tr><td>summary</td><td>fg</td><td>p05</td><td>403.0</td></tr>
  410. <tr><td>summary</td><td>fg</td><td>p95</td><td>1346.0</td></tr>
  411. <tr><td>summary</td><td>fg</td><td>stdv</td><td>292.6782</td></tr>
  412. <tr><td colspan=3>tsnr</td><td>39.74854335235432</td></tr>
  413. </table>
  414. </div>
  415. </div>
  416. </div>
  417. </div>
  418. </div>
  419. </div>
  420. <div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%;">
  421. <div class="card-header m-0">
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  429. <button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
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  443. <div class="accordion-item">
  444. <h2 class="accordion-header" id="qcartifacts-head">
  445. <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
  446. Record specific artifacts
  447. </button>
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  449. <div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
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  453. <input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
  454. <label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
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  457. <input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
  458. <label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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  462. <label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
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  464. <div class="form-check form-switch small">
  465. <input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
  466. <label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
  467. </div>
  468. <div class="form-check form-switch small">
  469. <input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
  470. <label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
  471. </div>
  472. <div class="form-check form-switch small">
  473. <input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
  474. <label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
  475. </div>
  476. <div class="form-check form-switch small">
  477. <input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
  478. <label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
  479. </div>
  480. <div class="form-check form-switch small">
  481. <input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
  482. <label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
  483. </div>
  484. <div class="form-check form-switch small">
  485. <input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
  486. <label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
  487. </div>
  488. <div class="form-check form-switch small">
  489. <input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
  490. <label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
  491. </div>
  492. <div class="form-check form-switch small">
  493. <input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
  494. <label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
  495. </div>
  496. <div class="form-check form-switch small">
  497. <input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
  498. <label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
  499. </div>
  500. <div class="form-check form-switch small">
  501. <input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
  502. <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
  503. </div>
  504. <div class="form-check form-switch small">
  505. <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
  506. <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
  507. </div>
  508. </fieldset>
  509. </div> <!-- accordion-body -->
  510. </div> <!-- accordion-collapse -->
  511. </div> <!-- accordion-item -->
  512. <div class="accordion-item">
  513. <h2 class="accordion-header" id="qcextra-head">
  514. <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
  515. Extra details
  516. </button>
  517. </h2>
  518. <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
  519. <div class="accordion-body">
  520. <div class="input-group">
  521. <span class="input-group-text">Comments</span>
  522. <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
  523. </div>
  524. <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
  525. <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
  526. <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
  527. <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
  528. <li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
  529. </ul>
  530. </div> <!-- accordion-body -->
  531. </div> <!-- accordion-collapse -->
  532. </div> <!-- accordion-item -->
  533. </div>
  534. <div style="margin-top: 10px">
  535. <a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
  536. </div>
  537. <script type="text/javascript">
  538. var MINIMUM_RATING_TIME = 10
  539. $('#qcslider').on('input', function() {
  540. if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
  541. $('#btn-download').removeClass('disabled');
  542. $('#btn-download').removeAttr('aria-disabled');
  543. $('#btn-post').removeAttr('disabled');
  544. };
  545. $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
  546. return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
  547. });
  548. $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
  549. return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
  550. });
  551. if ( $(this).val() < 1.5 ) {
  552. $('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
  553. } else if ( $(this).val() > 3.5 ) {
  554. $('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
  555. } else if ( $(this).val() < 2.5 ) {
  556. $('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
  557. } else {
  558. $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
  559. };
  560. var payload = read_form();
  561. });
  562. $('#qcextra-confidence').on('input', function() {
  563. if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
  564. $('#btn-download').removeClass('disabled');
  565. $('#btn-download').removeAttr('aria-disabled');
  566. $('#btn-post').removeAttr('disabled');
  567. };
  568. $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
  569. return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
  570. });
  571. $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
  572. return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
  573. });
  574. if ( $(this).val() < 2.0 ) {
  575. $('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
  576. } else {
  577. $('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
  578. };
  579. var payload = read_form();
  580. });
  581. $('#qcextra-comments').bind('input propertychange', function() {
  582. if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
  583. $('#btn-download').removeClass('disabled');
  584. $('#btn-download').removeAttr('aria-disabled');
  585. $('#btn-post').removeAttr('disabled');
  586. };
  587. });
  588. $( '#btn-post' ).click( function() {
  589. var payload = read_form();
  590. var md5sum = "unspecified";
  591. var params = {
  592. 'rating': payload['rating'],
  593. 'md5sum': md5sum,
  594. 'name': "",
  595. 'comment': JSON.stringify(payload['artifacts'])
  596. };
  597. // disable development releases
  598. var authorization = $(this).val();
  599. var ratingReq = new XMLHttpRequest();
  600. ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
  601. ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
  602. ratingReq.setRequestHeader("Authorization", authorization);
  603. ratingReq.onload = function () {
  604. status = ratingReq.status;
  605. $('#btn-post').removeClass('btn-primary');
  606. $('#btn-post').attr('disabled', true);
  607. $('#btn-post').attr('aria-disabled', true);
  608. $('#btn-post').prop('disabled');
  609. $('#btn-post').addClass('disabled');
  610. $('#btn-post').removeClass('active');
  611. if (status === "201") {
  612. $('#btn-post').addClass('btn-success');
  613. $('#btn-post').html('Posted!');
  614. } else {
  615. $('#btn-post').addClass('btn-danger');
  616. $('#btn-post').html('Failed');
  617. };
  618. };
  619. ratingReq.send(JSON.stringify(params));
  620. });
  621. $( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
  622. if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
  623. $('#btn-download').removeClass('disabled');
  624. $('#btn-download').removeAttr('aria-disabled');
  625. $('#btn-post').removeAttr('disabled');
  626. };
  627. var payload = read_form();
  628. });
  629. $( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
  630. toggle_rating();
  631. });
  632. </script>
  633. </div>
  634. <script type="text/javascript">
  635. function toggle(id) {
  636. var element = document.getElementById(id);
  637. if(element.style.display == 'block')
  638. element.style.display = 'none';
  639. else
  640. element.style.display = 'block';
  641. }
  642. </script>
  643. </body>
  644. </html>