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sub-001_ses-pilot001_acq-morphobox_T1w.html

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  114.                 <li><a class="dropdown-item" href="#errors">Errors</a></li>
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  132.     <div id="Basic visual report" class="mt-5">
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  133.     <h1 class="sub-report-title pt-5 ps-4">Basic visual report</h1>
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  134.         <div id="acquisition-morphobox_datatype-figures_desc-background_session-pilot001_subject-001_suffix-T1w" class="ps-4 pe-4 mb-2">
    135. 

  135. <h3 class="run-title mt-3">View of the background of the anatomical image</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p>                    <div class="reportlet">
    136. 

  136. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot001_acq-morphobox_desc-background_T1w.svg" style="width: 100%" />
    137. 

  137. </div>
    138. 

  138. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot001_acq-morphobox_desc-background_T1w.svg" target="_blank">sub-001/figures/sub-001_ses-pilot001_acq-morphobox_desc-background_T1w.svg</a></small>
    139. 

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    142. 

  142. <h3 class="run-title mt-3">Zoomed-in mosaic view of the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p>                    <div class="reportlet">
    143. 

  143. <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot001_acq-morphobox_desc-zoomed_T1w.svg" style="width: 100%" />
    144. 

  144. </div>
    145. 

  145. <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot001_acq-morphobox_desc-zoomed_T1w.svg" target="_blank">sub-001/figures/sub-001_ses-pilot001_acq-morphobox_desc-zoomed_T1w.svg</a></small>
    146. 

  146. 

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  148.     </div>
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  150.     <h1 class="sub-report-title pt-5 ps-4">About</h1>
    151. 

  151.         <div id="errors" class="ps-4 pe-4 mb-2">
    152. 

  152. <h2 class="sub-report-group mt-4">Errors</h2>                    <p class="alert alert-success" role="alert">No errors to report!</p>
    153. 

  153.         </div>
    154. 

  154.         <div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
    155. 

  155. <h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
    156. 

  156. reconstructing the provenance of the corresponding derivatives.
    157. 

  157. </p>                    <div class="accordion accordion-flush" id="about-metadata">
    158. 

  158. 

  159. 

  160.   <div class="accordion-item">
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  162.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
    163. 

  163.         Provenance Information
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  164.       </button>
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  165.     </h2>
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    167. 

  167.       <div class="accordion-body metadata-table">
    168. 

  168.       <table id="about-metadata-table-0" class="table table-sm table-striped">
    169. 

  169. <tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
    170. 

  170. <tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-pilot001/anat/sub-001_ses-pilot001_acq-morphobox_T1w.nii.gz</td></tr>
    171. 

  171. <tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
    172. 

  172. <tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
    173. 

  173. <tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
    174. 

  174. <tr><td colspan=2>md5sum</td><td>cb83b068ce81b9d9faf9bee91d48847e</td></tr>
    175. 

  175. <tr><td>warnings</td><td>large_rot_frame</td><td>True</td></tr>
    176. 

  176. <tr><td>warnings</td><td>small_air_mask</td><td>False</td></tr>
    177. 

  177. </table>
    178. 

  178. 

  179.       </div>
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  180.     </div>
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  181.   </div>
    182. 

  182. 

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  186.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
    187. 

  187.         Dataset Information
    188. 

  188.       </button>
    189. 

  189.     </h2>
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    191. 

  191.       <div class="accordion-body metadata-table">
    192. 

  192.       <table id="about-metadata-table-1" class="table table-sm table-striped">
    193. 

  193. <tr><td colspan=2>AcquisitionMatrixPE</td><td>248</td></tr>
    194. 

  194. <tr><td colspan=2>AcquisitionNumber</td><td>1</td></tr>
    195. 

  195. <tr><td colspan=2>AcquisitionTime</td><td>15:49:1.287500</td></tr>
    196. 

  196. <tr><td colspan=2>BaseResolution</td><td>256</td></tr>
    197. 

  197. <tr><td colspan=2>BodyPartExamined</td><td>BRAIN</td></tr>
    198. 

  198. <tr><td colspan=2>CoilCombinationMethod</td><td>Adaptive Combine</td></tr>
    199. 

  199. <tr><td colspan=2>CoilString</td><td>HeadNeck_64</td></tr>
    200. 

  200. <tr><td colspan=2>ConversionSoftware</td><td>dcm2niix</td></tr>
    201. 

  201. <tr><td colspan=2>ConversionSoftwareVersion</td><td>v1.0.20220720</td></tr>
    202. 

  202. <tr><td colspan=2>DeviceSerialNumber</td><td>67014</td></tr>
    203. 

  203. <tr><td colspan=2>DwellTime</td><td>8.2e-06</td></tr>
    204. 

  204. <tr><td colspan=2>EchoTime</td><td>0.00298</td></tr>
    205. 

  205. <tr><td colspan=2>FlipAngle</td><td>9</td></tr>
    206. 

  206. <tr><td colspan=2>HeudiconvVersion</td><td>1.0.0</td></tr>
    207. 

  207. <tr><td colspan=2>ImageComments</td><td>Image quality: high</td></tr>
    208. 

  208. <tr><td colspan=2>ImageOrientationPatientDICOM</td><td>[-0.061483, 0.988025, 0.141516, 0.0509423, 0.144706, -0.988162]</td></tr>
    209. 

  209. <tr><td colspan=2>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS3D', 'MFSPLIT']</td></tr>
    210. 

  210. <tr><td colspan=2>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'NONE']</td></tr>
    211. 

  211. <tr><td colspan=2>ImagingFrequency</td><td>123.248</td></tr>
    212. 

  212. <tr><td colspan=2>InPlanePhaseEncodingDirectionDICOM</td><td>ROW</td></tr>
    213. 

  213. <tr><td colspan=2>InstitutionAddress</td><td>Rue du Bugnon 21,Lausanne,District,CH,1011</td></tr>
    214. 

  214. <tr><td colspan=2>InstitutionName</td><td>CHUV</td></tr>
    215. 

  215. <tr><td colspan=2>InversionTime</td><td>0.9</td></tr>
    216. 

  216. <tr><td colspan=2>MRAcquisitionType</td><td>3D</td></tr>
    217. 

  217. <tr><td colspan=2>MagneticFieldStrength</td><td>3</td></tr>
    218. 

  218. <tr><td colspan=2>Manufacturer</td><td>Siemens</td></tr>
    219. 

  219. <tr><td colspan=2>ManufacturersModelName</td><td>MAGNETOM Prisma Fit</td></tr>
    220. 

  220. <tr><td colspan=2>MatrixCoilMode</td><td>GRAPPA</td></tr>
    221. 

  221. <tr><td colspan=2>Modality</td><td>MR</td></tr>
    222. 

  222. <tr><td colspan=2>NonlinearGradientCorrection</td><td>True</td></tr>
    223. 

  223. <tr><td colspan=2>ParallelReductionFactorInPlane</td><td>2</td></tr>
    224. 

  224. <tr><td colspan=2>PartialFourier</td><td>1</td></tr>
    225. 

  225. <tr><td colspan=2>PatientPosition</td><td>HFS</td></tr>
    226. 

  226. <tr><td colspan=2>PercentPhaseFOV</td><td>96.875</td></tr>
    227. 

  227. <tr><td colspan=2>PercentSampling</td><td>100</td></tr>
    228. 

  228. <tr><td colspan=2>PhaseEncodingSteps</td><td>248</td></tr>
    229. 

  229. <tr><td colspan=2>PhaseResolution</td><td>1</td></tr>
    230. 

  230. <tr><td colspan=2>PixelBandwidth</td><td>238</td></tr>
    231. 

  231. <tr><td colspan=2>ProcedureStepDescription</td><td>RESEARCH Oscar</td></tr>
    232. 

  232. <tr><td colspan=2>ProtocolName</td><td>t1_mprage_pre_Morpho</td></tr>
    233. 

  233. <tr><td colspan=2>PulseSequenceDetails</td><td>%SiemensSeq%\tfl</td></tr>
    234. 

  234. <tr><td colspan=2>ReceiveCoilActiveElements</td><td>HC1-7;NC1,2</td></tr>
    235. 

  235. <tr><td colspan=2>ReceiveCoilName</td><td>HeadNeck_64</td></tr>
    236. 

  236. <tr><td colspan=2>ReconMatrixPE</td><td>248</td></tr>
    237. 

  237. <tr><td colspan=2>RefLinesPE</td><td>24</td></tr>
    238. 

  238. <tr><td colspan=2>RepetitionTime</td><td>2.3</td></tr>
    239. 

  239. <tr><td colspan=2>SAR</td><td>0.0520076</td></tr>
    240. 

  240. <tr><td colspan=2>ScanOptions</td><td>PER</td></tr>
    241. 

  241. <tr><td colspan=2>ScanningSequence</td><td>GR</td></tr>
    242. 

  242. <tr><td colspan=2>SequenceName</td><td>*tfl3d1_16ns</td></tr>
    243. 

  243. <tr><td colspan=2>SequenceVariant</td><td>SK</td></tr>
    244. 

  244. <tr><td colspan=2>SeriesDescription</td><td>t1_mprage_pre_Morpho</td></tr>
    245. 

  245. <tr><td colspan=2>SeriesNumber</td><td>5</td></tr>
    246. 

  246. <tr><td colspan=2>ShimSetting</td><td>[8238, -5711, -6050, 304, -74, -659, 102, 4]</td></tr>
    247. 

  247. <tr><td colspan=2>SliceThickness</td><td>1.1</td></tr>
    248. 

  248. <tr><td colspan=2>SoftwareVersions</td><td>syngo MR XA30</td></tr>
    249. 

  249. <tr><td colspan=2>StationName</td><td>LRG10884</td></tr>
    250. 

  250. <tr><td colspan=2>TxRefAmp</td><td>245.506</td></tr>
    251. 

  251. <tr><td>dcmmeta</td><td>affine</td><td>[[1.096500039100647, -0.061482999473810196, 0.050942301750183105, -96.8798828125], [0.05900000035762787, 0.9880250096321106, 0.14470599591732025, -121.63520812988281], [-0.06509999930858612, -0.14151600003242493, 0.9881619811058044, -116.47465515136719], [0.0, 0.0, 0.0, 1.0]]</td></tr>
    252. 

  252. <tr><td>dcmmeta</td><td>reorient_transform</td><td>[[0.0, 0.0, -1.0, 255.0], [0.0, -1.0, 0.0, 247.0], [-1.0, 0.0, 0.0, 175.0], [0.0, 0.0, 0.0, 1.0]]</td></tr>
    253. 

  253. <tr><td>dcmmeta</td><td>shape</td><td>[176, 248, 256]</td></tr>
    254. 

  254. <tr><td>dcmmeta</td><td>slice_dim</td><td>0</td></tr>
    255. 

  255. <tr><td>dcmmeta</td><td>version</td><td>0.6</td></tr>
    256. 

  256. </table>
    257. 

  257. 

  258.       </div>
    259. 

  259.     </div>
    260. 

  260.   </div>
    261. 

  261. 

  262. 

  263.   <div class="accordion-item">
    264. 

  264.     <h2 class="accordion-header" id="about-metadata-2">
    265. 

  265.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
    266. 

  266.         Extracted Image quality metrics (IQMs)
    267. 

  267.       </button>
    268. 

  268.     </h2>
    269. 

  269.     <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
    270. 

  270.       <div class="accordion-body metadata-table">
    271. 

  271.       <table id="about-metadata-table-2" class="table table-sm table-striped">
    272. 

  272. <tr><td colspan=3>cjv</td><td>0.5862684210526315</td></tr>
    273. 

  273. <tr><td colspan=3>cnr</td><td>1.7041012000002378</td></tr>
    274. 

  274. <tr><td colspan=3>efc</td><td>0.5136</td></tr>
    275. 

  275. <tr><td colspan=3>fber</td><td>-1.0</td></tr>
    276. 

  276. <tr><td>fwhm</td><td colspan=2>avg</td><td>3.9781342146768517</td></tr>
    277. 

  277. <tr><td>fwhm</td><td colspan=2>x</td><td>3.840572644030557</td></tr>
    278. 

  278. <tr><td>fwhm</td><td colspan=2>y</td><td>4.29707</td></tr>
    279. 

  279. <tr><td>fwhm</td><td colspan=2>z</td><td>3.79676</td></tr>
    280. 

  280. <tr><td>icvs</td><td colspan=2>csf</td><td>0.2762122282529764</td></tr>
    281. 

  281. <tr><td>icvs</td><td colspan=2>gm</td><td>0.3771519252227781</td></tr>
    282. 

  282. <tr><td>icvs</td><td colspan=2>wm</td><td>0.3466358465242455</td></tr>
    283. 

  283. <tr><td>inu</td><td colspan=2>med</td><td>0.5703350901603699</td></tr>
    284. 

  284. <tr><td>inu</td><td colspan=2>range</td><td>0.2260447934269904</td></tr>
    285. 

  285. <tr><td>qi</td><td colspan=2>1</td><td>0.0</td></tr>
    286. 

  286. <tr><td>qi</td><td colspan=2>2</td><td>0.0014814919275902253</td></tr>
    287. 

  287. <tr><td>rpve</td><td colspan=2>csf</td><td>8.013534669390081</td></tr>
    288. 

  288. <tr><td>rpve</td><td colspan=2>gm</td><td>7.918498222984694</td></tr>
    289. 

  289. <tr><td>rpve</td><td colspan=2>wm</td><td>8.017417688077588</td></tr>
    290. 

  290. <tr><td>size</td><td colspan=2>x</td><td>176</td></tr>
    291. 

  291. <tr><td>size</td><td colspan=2>y</td><td>248</td></tr>
    292. 

  292. <tr><td>size</td><td colspan=2>z</td><td>256</td></tr>
    293. 

  293. <tr><td>snr</td><td colspan=2>csf</td><td>1.8483347177478064</td></tr>
    294. 

  294. <tr><td>snr</td><td colspan=2>gm</td><td>4.943689978883494</td></tr>
    295. 

  295. <tr><td>snr</td><td colspan=2>total</td><td>5.4411205629168835</td></tr>
    296. 

  296. <tr><td>snr</td><td colspan=2>wm</td><td>9.53133699211935</td></tr>
    297. 

  297. <tr><td>snrd</td><td colspan=2>csf</td><td>56.0148505180784</td></tr>
    298. 

  298. <tr><td>snrd</td><td colspan=2>gm</td><td>105.06740323164986</td></tr>
    299. 

  299. <tr><td>snrd</td><td colspan=2>total</td><td>103.74878622322052</td></tr>
    300. 

  300. <tr><td>snrd</td><td colspan=2>wm</td><td>150.16410491993332</td></tr>
    301. 

  301. <tr><td>spacing</td><td colspan=2>x</td><td>1.100000023841858</td></tr>
    302. 

  302. <tr><td>spacing</td><td colspan=2>y</td><td>1.0</td></tr>
    303. 

  303. <tr><td>spacing</td><td colspan=2>z</td><td>1.0</td></tr>
    304. 

  304. <tr><td>summary</td><td>bg</td><td>k</td><td>194.186</td></tr>
    305. 

  305. <tr><td>summary</td><td>bg</td><td>mad</td><td>0.0</td></tr>
    306. 

  306. <tr><td>summary</td><td>bg</td><td>mean</td><td>1.7586</td></tr>
    307. 

  307. <tr><td>summary</td><td>bg</td><td>median</td><td>0.0</td></tr>
    308. 

  308. <tr><td>summary</td><td>bg</td><td>n</td><td>2952735.0</td></tr>
    309. 

  309. <tr><td>summary</td><td>bg</td><td>p05</td><td>0.0</td></tr>
    310. 

  310. <tr><td>summary</td><td>bg</td><td>p95</td><td>8.0</td></tr>
    311. 

  311. <tr><td>summary</td><td>bg</td><td>stdv</td><td>4.1403</td></tr>
    312. 

  312. <tr><td>summary</td><td>csf</td><td>k</td><td>-0.8558</td></tr>
    313. 

  313. <tr><td>summary</td><td>csf</td><td>mad</td><td>149.9321</td></tr>
    314. 

  314. <tr><td>summary</td><td>csf</td><td>mean</td><td>370.9711</td></tr>
    315. 

  315. <tr><td>summary</td><td>csf</td><td>median</td><td>354.0</td></tr>
    316. 

  316. <tr><td>summary</td><td>csf</td><td>n</td><td>380085.15148946596</td></tr>
    317. 

  317. <tr><td>summary</td><td>csf</td><td>p05</td><td>78.0</td></tr>
    318. 

  318. <tr><td>summary</td><td>csf</td><td>p95</td><td>689.0</td></tr>
    319. 

  319. <tr><td>summary</td><td>csf</td><td>stdv</td><td>191.5235</td></tr>
    320. 

  320. <tr><td>summary</td><td>gm</td><td>k</td><td>-0.7099</td></tr>
    321. 

  321. <tr><td>summary</td><td>gm</td><td>mad</td><td>91.7731</td></tr>
    322. 

  322. <tr><td>summary</td><td>gm</td><td>mean</td><td>668.8436</td></tr>
    323. 

  323. <tr><td>summary</td><td>gm</td><td>median</td><td>664.0</td></tr>
    324. 

  324. <tr><td>summary</td><td>gm</td><td>n</td><td>518984.4328743929</td></tr>
    325. 

  325. <tr><td>summary</td><td>gm</td><td>p05</td><td>452.0</td></tr>
    326. 

  326. <tr><td>summary</td><td>gm</td><td>p95</td><td>920.0</td></tr>
    327. 

  327. <tr><td>summary</td><td>gm</td><td>stdv</td><td>134.3125</td></tr>
    328. 

  328. <tr><td>summary</td><td>wm</td><td>k</td><td>-0.5517</td></tr>
    329. 

  329. <tr><td>summary</td><td>wm</td><td>mad</td><td>75.3134</td></tr>
    330. 

  330. <tr><td>summary</td><td>wm</td><td>mean</td><td>923.1055</td></tr>
    331. 

  331. <tr><td>summary</td><td>wm</td><td>median</td><td>949.0</td></tr>
    332. 

  332. <tr><td>summary</td><td>wm</td><td>n</td><td>476992.4165601361</td></tr>
    333. 

  333. <tr><td>summary</td><td>wm</td><td>p05</td><td>725.0</td></tr>
    334. 

  334. <tr><td>summary</td><td>wm</td><td>p95</td><td>1047.0</td></tr>
    335. 

  335. <tr><td>summary</td><td>wm</td><td>stdv</td><td>99.5662</td></tr>
    336. 

  336. <tr><td>tpm</td><td>overlap</td><td>csf</td><td>0.2136963234876445</td></tr>
    337. 

  337. <tr><td>tpm</td><td>overlap</td><td>gm</td><td>0.5543696627134482</td></tr>
    338. 

  338. <tr><td>tpm</td><td>overlap</td><td>wm</td><td>0.5629931617368248</td></tr>
    339. 

  339. <tr><td colspan=3>wm2max</td><td>0.5192208080700603</td></tr>
    340. 

  340. </table>
    341. 

  341. 

  342.       </div>
    343. 

  343.     </div>
    344. 

  344.   </div>
    345. 

  345. 

  346. </div>
    347. 

  347.         </div>
    348. 

  348.     </div>
    349. 

  349. 

  350. <div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%;">
    351. 

  351. <div class="card-header m-0">
    352. 

  352.     Rating widget
    353. 

  353.     <button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
    354. 

  354. </div>
    355. 

  355. <div class="card-body">
    356. 

  356. <div class="accordion">
    357. 

  357.   <div class="accordion-item">
    358. 

  358.     <h2 class="accordion-header" id="qcslider-head">
    359. 

  359.       <button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
    360. 

  360.     </h2>
    361. 

  361.     <div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
    362. 

  362.       <div class="accordion-body">
    363. 

  363.         <input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
    364. 

  364.         <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
    365. 

  365.             <li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
    366. 

  366.             <li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
    367. 

  367.             <li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
    368. 

  368.             <li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
    369. 

  369.         </ul>
    370. 

  370.       </div>
    371. 

  371.     </div>
    372. 

  372.   </div>
    373. 

  373. 

  374.   <div class="accordion-item">
    375. 

  375.     <h2 class="accordion-header" id="qcartifacts-head">
    376. 

  376.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
    377. 

  377.         Record specific artifacts
    378. 

  378.       </button>
    379. 

  379.     </h2>
    380. 

  380.     <div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
    381. 

  381.       <div class="accordion-body">
    382. 

  382.         <fieldset id="qcartifacts-group" class="form-group">
    383. 

  383.             <div class="form-check form-switch small">
    384. 

  384.                 <input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
    385. 

  385.                 <label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
    386. 

  386.             </div>
    387. 

  387.             <div class="form-check form-switch small">
    388. 

  388.                 <input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
    389. 

  389.                 <label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
    390. 

  390.             </div>
    391. 

  391.             <div class="form-check form-switch small">
    392. 

  392.                 <input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
    393. 

  393.                 <label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
    394. 

  394.             </div>
    395. 

  395.             <div class="form-check form-switch small">
    396. 

  396.                 <input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
    397. 

  397.                 <label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
    398. 

  398.             </div>
    399. 

  399.             <div class="form-check form-switch small">
    400. 

  400.                 <input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
    401. 

  401.                 <label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
    402. 

  402.             </div>
    403. 

  403.             <div class="form-check form-switch small">
    404. 

  404.                 <input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
    405. 

  405.                 <label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
    406. 

  406.             </div>
    407. 

  407.             <div class="form-check form-switch small">
    408. 

  408.                 <input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
    409. 

  409.                 <label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
    410. 

  410.             </div>
    411. 

  411.             <div class="form-check form-switch small">
    412. 

  412.                 <input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
    413. 

  413.                 <label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
    414. 

  414.             </div>
    415. 

  415.             <div class="form-check form-switch small">
    416. 

  416.                 <input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
    417. 

  417.                 <label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
    418. 

  418.             </div>
    419. 

  419.             <div class="form-check form-switch small">
    420. 

  420.                 <input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
    421. 

  421.                 <label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
    422. 

  422.             </div>
    423. 

  423.             <div class="form-check form-switch small">
    424. 

  424.                 <input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
    425. 

  425.                 <label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
    426. 

  426.             </div>
    427. 

  427.             <div class="form-check form-switch small">
    428. 

  428.                 <input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
    429. 

  429.                 <label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
    430. 

  430.             </div>
    431. 

  431.             <div class="form-check form-switch small">
    432. 

  432.                 <input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
    433. 

  433.                 <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
    434. 

  434.             </div>
    435. 

  435.             <div class="form-check form-switch small">
    436. 

  436.                 <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
    437. 

  437.                 <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
    438. 

  438.             </div>
    439. 

  439.         </fieldset>
    440. 

  440.       </div> <!-- accordion-body -->
    441. 

  441.     </div> <!-- accordion-collapse -->
    442. 

  442.   </div> <!-- accordion-item -->
    443. 

  443.   <div class="accordion-item">
    444. 

  444.     <h2 class="accordion-header" id="qcextra-head">
    445. 

  445.       <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
    446. 

  446.         Extra details
    447. 

  447.       </button>
    448. 

  448.     </h2>
    449. 

  449.     <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
    450. 

  450.       <div class="accordion-body">
    451. 

  451.         <div class="input-group">
    452. 

  452.           <span class="input-group-text">Comments</span>
    453. 

  453.           <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
    454. 

  454.         </div>
    455. 

  455. 

  456.         <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
    457. 

  457.         <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
    458. 

  458.         <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
    459. 

  459.             <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
    460. 

  460.             <li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
    461. 

  461.         </ul>
    462. 

  462.        </div> <!-- accordion-body -->
    463. 

  463.     </div> <!-- accordion-collapse -->
    464. 

  464.   </div> <!-- accordion-item -->
    465. 

  465. </div>
    466. 

  466. <div style="margin-top: 10px">
    467. 

  467. <a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
    468. 

  468. </div>
    469. 

  469. <script type="text/javascript">
    470. 

  470. var MINIMUM_RATING_TIME = 10
    471. 

  471. $('#qcslider').on('input', function() {
    472. 

  472. 

  473.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    474. 

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    475. 

  475.         $('#btn-download').removeAttr('aria-disabled');
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  476.         $('#btn-post').removeAttr('disabled');
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    478. 

  478. 

  479.     $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
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  486.     if ( $(this).val() < 1.5 ) {
    487. 

  487.         $('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
    488. 

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    489. 

  489.         $('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
    490. 

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    491. 

  491.         $('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
    492. 

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    493. 

  493.         $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
    494. 

  494.     };
    495. 

  495. 

  496.     var payload = read_form();
    497. 

  497. });
    498. 

  498. 

  499. $('#qcextra-confidence').on('input', function() {
    500. 

  500.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    501. 

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    505. 

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  506.     $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
    507. 

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    508. 

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    509. 

  509.     $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
    510. 

  510.         return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
    511. 

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    512. 

  512. 

  513.     if ( $(this).val() < 2.0 ) {
    514. 

  514.         $('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
    515. 

  515.     } else {
    516. 

  516.         $('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
    517. 

  517.     };
    518. 

  518. 

  519.     var payload = read_form();
    520. 

  520. });
    521. 

  521. 

  522. 

  523. $('#qcextra-comments').bind('input propertychange', function() {
    524. 

  524.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    525. 

  525.         $('#btn-download').removeClass('disabled');
    526. 

  526.         $('#btn-download').removeAttr('aria-disabled');
    527. 

  527.         $('#btn-post').removeAttr('disabled');
    528. 

  528.     };
    529. 

  529. });
    530. 

  530. 

  531. $( '#btn-post' ).click( function() {
    532. 

  532.     var payload = read_form();
    533. 

  533.     var md5sum = "unspecified";
    534. 

  534.     var params = {
    535. 

  535.         'rating': payload['rating'],
    536. 

  536.         'md5sum': md5sum,
    537. 

  537.         'name': "",
    538. 

  538.         'comment': JSON.stringify(payload['artifacts'])
    539. 

  539.     };
    540. 

  540. 

  541.     // disable development releases
    542. 

  542.     var authorization = $(this).val();
    543. 

  543.     var ratingReq = new XMLHttpRequest();
    544. 

  544.     ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
    545. 

  545.     ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
    546. 

  546.     ratingReq.setRequestHeader("Authorization", authorization);
    547. 

  547.     ratingReq.onload = function () {
    548. 

  548.         status = ratingReq.status;
    549. 

  549.         $('#btn-post').removeClass('btn-primary');
    550. 

  550.         $('#btn-post').attr('disabled', true);
    551. 

  551.         $('#btn-post').attr('aria-disabled', true);
    552. 

  552.         $('#btn-post').prop('disabled');
    553. 

  553.         $('#btn-post').addClass('disabled');
    554. 

  554.         $('#btn-post').removeClass('active');
    555. 

  555.         if (status === "201") {
    556. 

  556.             $('#btn-post').addClass('btn-success');
    557. 

  557.             $('#btn-post').html('Posted!');
    558. 

  558.         } else {
    559. 

  559.             $('#btn-post').addClass('btn-danger');
    560. 

  560.             $('#btn-post').html('Failed');
    561. 

  561.         };
    562. 

  562.     };
    563. 

  563.     ratingReq.send(JSON.stringify(params));
    564. 

  564. });
    565. 

  565. 

  566. $( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
    567. 

  567.     if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
    568. 

  568.         $('#btn-download').removeClass('disabled');
    569. 

  569.         $('#btn-download').removeAttr('aria-disabled');
    570. 

  570.         $('#btn-post').removeAttr('disabled');
    571. 

  571.     };
    572. 

  572.     
    573. 

  573.     var payload = read_form();
    574. 

  574. });
    575. 

  575. 

  576. $( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
    577. 

  577.     toggle_rating();
    578. 

  578. });
    579. 

  579. </script>
    580. 

  580. </div>
    581. 

  581. 

  582. <script type="text/javascript">
    583. 

  583. function toggle(id) {
    584. 

  584.     var element = document.getElementById(id);
    585. 

  585.     if(element.style.display == 'block')
    586. 

  586.         element.style.display = 'none';
    587. 

  587.     else
    588. 

  588.         element.style.display = 'block';
    589. 

  589. }
    590. 

  590. </script>
    591. 

  591. </body>
    592. 

  592. </html>
    593.