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- <div id="datatype-figures_desc-stdev_direction-AP_echo-1_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-stdev_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-stdev_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-background_direction-AP_echo-1_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-background_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-background_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-zoomed_direction-AP_echo-1_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-zoomed_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-zoomed_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-carpet_direction-AP_echo-1_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-carpet_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-carpet_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-stdev_direction-AP_echo-2_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-stdev_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-stdev_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-background_direction-AP_echo-2_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-background_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-background_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-zoomed_direction-AP_echo-2_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-zoomed_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-zoomed_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-carpet_direction-AP_echo-2_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-carpet_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-carpet_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-stdev_direction-AP_echo-3_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-stdev_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-stdev_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-background_direction-AP_echo-3_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-background_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-background_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-zoomed_direction-AP_echo-3_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-zoomed_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-zoomed_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-carpet_direction-AP_echo-3_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-carpet_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-carpet_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-stdev_direction-AP_echo-4_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-stdev_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-stdev_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-background_direction-AP_echo-4_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-background_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-background_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-zoomed_direction-AP_echo-4_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-zoomed_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-zoomed_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-carpet_direction-AP_echo-4_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-carpet_bold.svg" style="width: 100%" />
- </div>
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- <div id="Extended echo-wise reports" class="mt-5">
- <h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
- <div id="datatype-figures_desc-mean_direction-AP_echo-1_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-1_desc-mean_bold.svg" style="width: 100%" />
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- <div id="datatype-figures_desc-mean_direction-AP_echo-2_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-2_desc-mean_bold.svg" style="width: 100%" />
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- </div>
- <div id="datatype-figures_desc-mean_direction-AP_echo-3_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-3_desc-mean_bold.svg" style="width: 100%" />
- </div>
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- </div>
- <div id="datatype-figures_desc-mean_direction-AP_echo-4_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
- <img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-mean_bold.svg" style="width: 100%" />
- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_echo-4_desc-mean_bold.svg</a></small>
- </div>
- </div>
- <div id="Extended reports shared across echos" class="mt-5">
- <h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
- <div id="datatype-figures_desc-brainmask_direction-AP_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
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- </div>
- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_desc-brainmask_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_desc-brainmask_bold.svg</a></small>
- </div>
- <div id="datatype-figures_desc-norm_direction-AP_session-009_subject-001_suffix-bold_task-rest" class="ps-4 pe-4 mb-2">
- <h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
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- <small>Get figure file: <a href="./sub-001/figures/sub-001_ses-009_task-rest_dir-AP_desc-norm_bold.svg" target="_blank">sub-001/figures/sub-001_ses-009_task-rest_dir-AP_desc-norm_bold.svg</a></small>
- </div>
- </div>
- <div id="About" class="mt-5">
- <h1 class="sub-report-title pt-5 ps-4">About</h1>
- <div id="errors" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
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- <div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
- <h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
- reconstructing the provenance of the corresponding derivatives.
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- Provenance Information
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- <div class="accordion-body metadata-table">
- <table id="about-metadata-table-0" class="table table-sm table-striped">
- <tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
- <tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-009/func/sub-001_ses-009_task-rest_dir-AP_echo-1_part-mag_bold.nii.gz</td></tr>
- <tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
- <tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
- <tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
- <tr><td colspan=2>md5sum</td><td>d632c557b0f49f5cb6e0a3e330669363</td></tr>
- </table>
- </div>
- </div>
- </div>
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- <h2 class="accordion-header" id="about-metadata-1">
- <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
- Dataset Information
- </button>
- </h2>
- <div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
- <div class="accordion-body metadata-table">
- <table id="about-metadata-table-1" class="table table-sm table-striped">
- <tr><td>AcquisitionDuration</td><td>1230.47</td></tr>
- <tr><td>AcquisitionMatrixPE</td><td>96</td></tr>
- <tr><td>AcquisitionTime</td><td>20:25:28.210000</td></tr>
- <tr><td>B0FieldSource</td><td>['009pepolarbold', '009phasediff']</td></tr>
- <tr><td>BandwidthPerPixelPhaseEncode</td><td>37.879</td></tr>
- <tr><td>BaseResolution</td><td>96</td></tr>
- <tr><td>DerivedVendorReportedEchoSpacing</td><td>0.000549997</td></tr>
- <tr><td>DwellTime</td><td>2.3e-06</td></tr>
- <tr><td>EchoNumber</td><td>1</td></tr>
- <tr><td>EchoTime</td><td>0.0126</td></tr>
- <tr><td>EchoTrainLength</td><td>35</td></tr>
- <tr><td>EffectiveEchoSpacing</td><td>0.000274998</td></tr>
- <tr><td>FlipAngle</td><td>64</td></tr>
- <tr><td>ImageOrientationPatientDICOM</td><td>[0.997499, 0.0305743, 0.0637244, -0.0076604, 0.943053, -0.332556]</td></tr>
- <tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'FMRI', 'NONE']</td></tr>
- <tr><td>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'TE1', 'DIS2D']</td></tr>
- <tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>COL</td></tr>
- <tr><td>PercentPhaseFOV</td><td>100</td></tr>
- <tr><td>PhaseEchoTime1</td><td>0.0126</td></tr>
- <tr><td>PhaseEchoTime2</td><td>0.03304</td></tr>
- <tr><td>PhaseEncodingDirection</td><td>j-</td></tr>
- <tr><td>PixelBandwidth</td><td>2264</td></tr>
- <tr><td>ProtocolName</td><td>func-bold_task-rest_dir-AP__cmrr_me4_sms4</td></tr>
- <tr><td>PulseSequenceName</td><td>epfid2d4_96</td></tr>
- <tr><td>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
- <tr><td>ReconMatrixPE</td><td>96</td></tr>
- <tr><td>RefLinesPE</td><td>22</td></tr>
- <tr><td>RepetitionTime</td><td>1.6</td></tr>
- <tr><td>SequenceVariant</td><td>SK\SS</td></tr>
- <tr><td>SeriesDescription</td><td>func-bold_task-rest_dir-AP__cmrr_me4_sms4</td></tr>
- <tr><td>SeriesNumber</td><td>23</td></tr>
- <tr><td>ShimSetting</td><td>[8253, -5624, -5989, 704, -32, -231, 27, 55]</td></tr>
- <tr><td>SliceThickness</td><td>2.2</td></tr>
- <tr><td>SliceTiming</td><td>[0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375, 0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375, 0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375, 0, 0.8425, 0.105, 0.9475, 0.21, 1.0525, 0.315, 1.1575, 0.42, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375]</td></tr>
- <tr><td>SpacingBetweenSlices</td><td>2.2</td></tr>
- <tr><td>TotalReadoutTime</td><td>0.0261249</td></tr>
- <tr><td>TxRefAmp</td><td>249.094</td></tr>
- <tr><td>WipMemBlock</td><td>f2699602-41f3-4494-a2cc-6b6b46bd6476||Sequence: R017 nxva30a/master r/d34922cc2+; Jun 27 2022 13:20:16 by eja</td></tr>
- </table>
- </div>
- </div>
- </div>
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- <h2 class="accordion-header" id="about-metadata-2">
- <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
- Extracted Image quality metrics (IQMs)
- </button>
- </h2>
- <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
- <div class="accordion-body metadata-table">
- <table id="about-metadata-table-2" class="table table-sm table-striped">
- <tr><td colspan=3>aor</td><td>[0.00063992, 0.00073532, 0.0007576533333333333, 0.0008126933333333334]</td></tr>
- <tr><td colspan=3>aqi</td><td>[0.0045386537600000006, 0.00501305524, 0.008373034733333333, 0.01525062888]</td></tr>
- <tr><td colspan=3>dummy_trs</td><td>0</td></tr>
- <tr><td>dvars</td><td colspan=2>nstd</td><td>26.135621135834448</td></tr>
- <tr><td>dvars</td><td colspan=2>std</td><td>1.0409350826568757</td></tr>
- <tr><td>dvars</td><td colspan=2>vstd</td><td>1.0055888982777044</td></tr>
- <tr><td colspan=3>efc</td><td>0.573</td></tr>
- <tr><td colspan=3>fber</td><td>676.3903</td></tr>
- <tr><td>fd</td><td colspan=2>mean</td><td>0.13526386982196018</td></tr>
- <tr><td>fd</td><td colspan=2>num</td><td>97</td></tr>
- <tr><td>fd</td><td colspan=2>perc</td><td>12.933333333333334</td></tr>
- <tr><td>fwhm</td><td colspan=2>avg</td><td>3.7447699786624953</td></tr>
- <tr><td>fwhm</td><td colspan=2>x</td><td>3.4231772368668403</td></tr>
- <tr><td>fwhm</td><td colspan=2>y</td><td>3.7607918778185097</td></tr>
- <tr><td>fwhm</td><td colspan=2>z</td><td>4.050340821302136</td></tr>
- <tr><td colspan=3>gcor</td><td>[0.0173623, 0.0152782, 0.0128675, 0.009796]</td></tr>
- <tr><td>gsr</td><td colspan=2>x</td><td>0.0022291867062449455</td></tr>
- <tr><td>gsr</td><td colspan=2>y</td><td>0.11653098464012146</td></tr>
- <tr><td>size</td><td colspan=2>t</td><td>750</td></tr>
- <tr><td>size</td><td colspan=2>x</td><td>96</td></tr>
- <tr><td>size</td><td colspan=2>y</td><td>96</td></tr>
- <tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
- <tr><td colspan=3>snr</td><td>2.3897820814744026</td></tr>
- <tr><td>spacing</td><td colspan=2>tr</td><td>1.600000023841858</td></tr>
- <tr><td>spacing</td><td colspan=2>x</td><td>2.197920083999634</td></tr>
- <tr><td>spacing</td><td colspan=2>y</td><td>2.197920083999634</td></tr>
- <tr><td>spacing</td><td colspan=2>z</td><td>2.200000047683716</td></tr>
- <tr><td>summary</td><td>bg</td><td>k</td><td>11.534</td></tr>
- <tr><td>summary</td><td>bg</td><td>mad</td><td>22.0433</td></tr>
- <tr><td>summary</td><td>bg</td><td>mean</td><td>129.4834</td></tr>
- <tr><td>summary</td><td>bg</td><td>median</td><td>32.0</td></tr>
- <tr><td>summary</td><td>bg</td><td>n</td><td>418931.0</td></tr>
- <tr><td>summary</td><td>bg</td><td>p05</td><td>1.0</td></tr>
- <tr><td>summary</td><td>bg</td><td>p95</td><td>651.0</td></tr>
- <tr><td>summary</td><td>bg</td><td>stdv</td><td>233.3935</td></tr>
- <tr><td>summary</td><td>fg</td><td>k</td><td>1.4595</td></tr>
- <tr><td>summary</td><td>fg</td><td>mad</td><td>313.264</td></tr>
- <tr><td>summary</td><td>fg</td><td>mean</td><td>878.4372</td></tr>
- <tr><td>summary</td><td>fg</td><td>median</td><td>832.0</td></tr>
- <tr><td>summary</td><td>fg</td><td>n</td><td>134029.0</td></tr>
- <tr><td>summary</td><td>fg</td><td>p05</td><td>394.0</td></tr>
- <tr><td>summary</td><td>fg</td><td>p95</td><td>1495.0</td></tr>
- <tr><td>summary</td><td>fg</td><td>stdv</td><td>348.1476</td></tr>
- <tr><td colspan=3>tsnr</td><td>51.21367077645846</td></tr>
- </table>
- </div>
- </div>
- </div>
- </div>
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- <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
- </div>
- <div class="form-check form-switch small">
- <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
- <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
- </div>
- </fieldset>
- </div> <!-- accordion-body -->
- </div> <!-- accordion-collapse -->
- </div> <!-- accordion-item -->
- <div class="accordion-item">
- <h2 class="accordion-header" id="qcextra-head">
- <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
- Extra details
- </button>
- </h2>
- <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
- <div class="accordion-body">
- <div class="input-group">
- <span class="input-group-text">Comments</span>
- <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
- </div>
- <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
- <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
- <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
- <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
- <li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
- </ul>
- </div> <!-- accordion-body -->
- </div> <!-- accordion-collapse -->
- </div> <!-- accordion-item -->
- </div>
- <div style="margin-top: 10px">
- <a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
- </div>
- <script type="text/javascript">
- var MINIMUM_RATING_TIME = 10
- $('#qcslider').on('input', function() {
- if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
- $('#btn-download').removeClass('disabled');
- $('#btn-download').removeAttr('aria-disabled');
- $('#btn-post').removeAttr('disabled');
- };
- $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
- return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
- });
- $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
- return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
- });
- if ( $(this).val() < 1.5 ) {
- $('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
- } else if ( $(this).val() > 3.5 ) {
- $('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
- } else if ( $(this).val() < 2.5 ) {
- $('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
- } else {
- $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
- };
- var payload = read_form();
- });
- $('#qcextra-confidence').on('input', function() {
- if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
- $('#btn-download').removeClass('disabled');
- $('#btn-download').removeAttr('aria-disabled');
- $('#btn-post').removeAttr('disabled');
- };
- $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
- return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
- });
- $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
- return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
- });
- if ( $(this).val() < 2.0 ) {
- $('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
- } else {
- $('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
- };
- var payload = read_form();
- });
- $('#qcextra-comments').bind('input propertychange', function() {
- if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
- $('#btn-download').removeClass('disabled');
- $('#btn-download').removeAttr('aria-disabled');
- $('#btn-post').removeAttr('disabled');
- };
- });
- $( '#btn-post' ).click( function() {
- var payload = read_form();
- var md5sum = "unspecified";
- var params = {
- 'rating': payload['rating'],
- 'md5sum': md5sum,
- 'name': "",
- 'comment': JSON.stringify(payload['artifacts'])
- };
- // disable development releases
- var authorization = $(this).val();
- var ratingReq = new XMLHttpRequest();
- ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
- ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
- ratingReq.setRequestHeader("Authorization", authorization);
- ratingReq.onload = function () {
- status = ratingReq.status;
- $('#btn-post').removeClass('btn-primary');
- $('#btn-post').attr('disabled', true);
- $('#btn-post').attr('aria-disabled', true);
- $('#btn-post').prop('disabled');
- $('#btn-post').addClass('disabled');
- $('#btn-post').removeClass('active');
- if (status === "201") {
- $('#btn-post').addClass('btn-success');
- $('#btn-post').html('Posted!');
- } else {
- $('#btn-post').addClass('btn-danger');
- $('#btn-post').html('Failed');
- };
- };
- ratingReq.send(JSON.stringify(params));
- });
- $( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
- if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
- $('#btn-download').removeClass('disabled');
- $('#btn-download').removeAttr('aria-disabled');
- $('#btn-post').removeAttr('disabled');
- };
-
- var payload = read_form();
- });
- $( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
- toggle_rating();
- });
- </script>
- </div>
- <script type="text/javascript">
- function toggle(id) {
- var element = document.getElementById(id);
- if(element.style.display == 'block')
- element.style.display = 'none';
- else
- element.style.display = 'block';
- }
- </script>
- </body>
- </html>
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