Final data from our Springer/Nature Scientific Reports paper. Please …

…cite as:

Ahmadi, SA., Raiser, T.M., Rühl, R.M. et al. IE-Map: a novel in-vivo atlas and template of the human inner ear. Sci Rep 11, 3293 (2021). https://doi.org/10.1038/s41598-021-82716-0

data/IEMap_CISS.nii.gz

@@ -0,0 +1 @@
+/annex/objects/MD5-s21248794--91f65ab07985c72e18938fcb2dc2aa24

data/IEMap_CT.nii.gz

@@ -0,0 +1 @@
+/annex/objects/MD5-s126057520--e5a1876f7dda3ae0eb6b6ee1e6c81f11

data/IEMap_T1.nii.gz

@@ -0,0 +1 @@
+/annex/objects/MD5-s20955115--2fbb67c30cccbf2de3c814f2adde6b36

data/IEMap_T2.nii.gz

@@ -0,0 +1 @@
+/annex/objects/MD5-s21231768--1394af9adac76dece772c11ab594b9b5

data/IEMap_microCT.nii.gz

@@ -0,0 +1 @@
+/annex/objects/MD5-s116953196--831069a3fcb8c003504aece7f37a67f7

data/SSC_ant.fcsv

@@ -0,0 +1,24 @@
+# Markups fiducial file version = 4.11
+# CoordinateSystem = RAS
+# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
+vtkMRMLMarkupsFiducialNode_17,7.51,3.752,4.078,0,0,0,1,0,1,1,SSC_ant-1,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,7.381,3.078,5.972,0,0,0,1,0,1,1,SSC_ant-2,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,5.728,1.125,7.283,0,0,0,1,0,1,1,SSC_ant-3,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,3.881,-0.958,5.97,0,0,0,1,0,1,1,SSC_ant-4,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,3.612,-1.71,4.384,0,0,0,1,0,1,1,SSC_ant-5,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,4.802,1.348,1.571,0,0,0,1,0,1,1,SSC_ant_H_inner,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,5.301,0.885,7.981,0,0,0,1,0,1,1,SSC_ant_H_outer,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,8.154,4.176,4.827,0,0,0,1,0,1,1,SSC_ant_W_1,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,3.094,-2.287,4.436,0,0,0,1,0,1,1,SSC_ant_W_2,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_17,6.981,3.066,4.057,0,0,0,1,0,1,1,SSC_ant_innerW_1_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,8.043,4.441,4.031,0,0,0,1,0,1,1,SSC_ant_innerW_1_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,5.741,1.137,6.542,0,0,0,1,0,1,1,SSC_ant_innerW_2_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,5.749,1.157,7.938,0,0,0,1,0,1,1,SSC_ant_innerW_2_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,4.193,-1.114,4.204,0,0,0,1,0,1,1,SSC_ant_innerW_3_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,3.247,-2.337,4.569,0,0,0,1,0,1,1,SSC_ant_innerW_3_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,7.963,3.24,3.812,0,0,0,1,0,1,1,SSC_ant_innerH_1_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,7.068,4.29,4.247,0,0,0,1,0,1,1,SSC_ant_innerH_1_down,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,6.106,0.857,7.516,0,0,0,1,0,1,1,SSC_ant_innerH_2_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,5.375,1.571,6.954,0,0,0,1,0,1,1,SSC_ant_innerH_2_down,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,4.009556507056583,-2.262590132759989,4.498,0,0,0,1,0,1,1,SSC_ant_innerH_3_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_17,3.11683360212969,-1.0543358562641068,4.498,0,0,0,1,0,1,1,SSC_ant_innerH_3_down,,vtkMRMLScalarVolumeNode3

data/SSC_ccrus.fcsv

@@ -0,0 +1,11 @@
+# Markups fiducial file version = 4.11
+# CoordinateSystem = RAS
+# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
+vtkMRMLMarkupsFiducialNode_65,3.9,-0.475,0.699,0,0,0,1,0,1,1,SSC_ccrus_L_1,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,-1.886,2.426,0,0,0,1,0,1,1,SSC_ccrus_L_2,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,0.237,1.345,0,0,0,1,0,1,1,SSC_ccrus_W1_1,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,-1.358,0,0,0,0,1,0,1,1,SSC_ccrus_W1_2,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,-0.554,2.281,0,0,0,1,0,1,1,SSC_ccrus_W2_1,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,-1.952,1.174,0,0,0,1,0,1,1,SSC_ccrus_W2_2,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,-0.976,3.204,0,0,0,1,0,1,1,SSC_ccrus_W3_1,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_65,3.9,-2.69,1.807,0,0,0,1,0,1,1,SSC_ccrus_W3_2,,vtkMRMLScalarVolumeNode3

data/SSC_lat.fcsv

@@ -0,0 +1,24 @@
+# Markups fiducial file version = 4.11
+# CoordinateSystem = RAS
+# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
+vtkMRMLMarkupsFiducialNode_4,8.392,3.093,1.249,0,0,0,1,0,1,1,SSC_lat-1,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.184,1.432,0.959,0,0,0,1,0,1,1,SSC_lat-2,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.145656396649779,-0.7564944608858895,0.5127379102396663,0,0,0,1,0,1,1,SSC_lat-3,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,8.086,-1.966,0.484,0,0,0,1,0,1,1,SSC_lat-4,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,5.543,-1.124,0.21,0,0,0,1,0,1,1,SSC_lat-5,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,6.392,1.154,0.653,0,0,0,1,0,1,1,SSC_lat_H_inner,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.839,-1.151,0.638,0,0,0,1,0,1,1,SSC_lat_H_outer,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,7.669,-2.877,0.363,0,0,0,1,0,1,1,SSC_lat_W_1,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.094,3.137,1.42,0,0,0,1,0,1,1,SSC_lat_W_2,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,6.109,-0.397,0.364,0,0,0,1,0,1,1,SSC_lat_innerW_1_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,5.138,-1.816,0.074,0,0,0,1,0,1,1,SSC_lat_innerW_1_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,9.353,-0.506,0.62,0,0,0,1,0,1,1,SSC_lat_innerW_2_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.812,-1.178,0.624,0,0,0,1,0,1,1,SSC_lat_innerW_2_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,8.758691787719727,1.591962218284607,0.9083724617958069,0,0,0,1,0,1,1,SSC_lat_innerW_3_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,9.712208856632692,3.5401087492648204,1.281,0,0,0,1,0,1,1,SSC_lat_innerW_3_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,8.619392886808392,3.05526786124418,1.982,0,0,0,1,0,1,1,SSC_lat_innerH_3_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,8.719439419257094,3.2707527003644645,0.395,0,0,0,1,0,1,1,SSC_lat_innerH_3_down,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.075767280915475,-0.7110819774513466,1.1315030034983362,0,0,0,1,0,1,1,SSC_lat_innerH_2_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,10.223444917851925,-0.7110819774513466,-0.1343229930422467,0,0,0,1,0,1,1,SSC_lat_innerH_2_down,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,6.082756083573594,-1.07,0.9706523245426686,0,0,0,1,0,1,1,SSC_lat_innerH_1_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_4,6.141317236925115,-1.0851194047098622,-0.7118123116380914,0,0,0,1,0,1,1,SSC_lat_innerH_1_down,,vtkMRMLScalarVolumeNode3

data/SSC_post.fcsv

@@ -0,0 +1,24 @@
+# Markups fiducial file version = 4.11
+# CoordinateSystem = RAS
+# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
+vtkMRMLMarkupsFiducialNode_10,5.329,-1.974,-3.017,0,0,0,1,0,1,1,SSC_post-1,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,7.138,-4.064,-2.364,0,0,0,1,0,1,1,SSC_post-2,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,8.563,-5.313,0.303,0,0,0,1,0,1,1,SSC_post-3,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,6.739,-4.551,2.784,0,0,0,1,0,1,1,SSC_post-4,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,4.571,-3.083,2.876,0,0,0,1,0,1,1,SSC_post-5,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,3.952,-1.309,-0.422,0,0,0,1,0,1,1,SSC_post_H_inner,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,9.27,-5.673,0.445,0,0,0,1,0,1,1,SSC_post_H_outer,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,6.986,-3.429,-3.569,0,0,0,1,0,1,1,SSC_post_W_1,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,5.467,-3.873,3.786,0,0,0,1,0,1,1,SSC_post_W_2,,vtkMRMLScalarVolumeNode4
+vtkMRMLMarkupsFiducialNode_10,5.4,-1.85,-3.889,0,0,0,1,0,1,1,SSC_post_innerW_1_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,5.251,-2.106,-2.187,0,0,0,1,0,1,1,SSC_post_innerW_1_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,9.114,-5.744,0.449,0,0,0,1,0,1,1,SSC_post_innerW_2_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,7.952,-4.706,0.243,0,0,0,1,0,1,1,SSC_post_innerW_2_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,4.416,-3.109,3.579,0,0,0,1,0,1,1,SSC_post_innerW_3_out,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,4.779,-3.074,2.05,0,0,0,1,0,1,1,SSC_post_innerW_3_in,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,5.753,-1.508,-2.924,0,0,0,1,0,1,1,SSC_post_innerH_1_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,4.857,-2.468,-3.109,0,0,0,1,0,1,1,SSC_post_innerH_1_down,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,8.979,-4.801,0.333,0,0,0,1,0,1,1,SSC_post_innerH_2_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,8.159,-5.767,0.281,0,0,0,1,0,1,1,SSC_post_innerH_2_down,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,5.101,-2.644,3.024,0,0,0,1,0,1,1,SSC_post_innerH_3_up,,vtkMRMLScalarVolumeNode3
+vtkMRMLMarkupsFiducialNode_10,4.132,-3.511,2.784,0,0,0,1,0,1,1,SSC_post_innerH_3_down,,vtkMRMLScalarVolumeNode3

data/VolumeProperty.vp

@@ -0,0 +1,9 @@
+1
+1
+0.6
+0.3
+0.5
+40
+8 2.17600083351135 0 2.17600083351135 0 12.3243560791016 1 12.3243560791016 1
+4 2.17600083351135 1 12.3243560791016 1
+28 2.17600083351135 0 0 0 2.17600083351135 0 0 0 4.46040487289429 0.250980392156863 0.250980392156863 0.250980392156863 7.50864791870117 0.501960784313725 0.501960784313725 0.501960784313725 10.5568752288818 0.752941176470588 0.752941176470588 0.752941176470588 13.5574798583984 1 1 1 13.5574798583984 1 1 1

data/fids_IETLiterature.fcsv

@@ -0,0 +1,30 @@
+# Markups fiducial file version = 4.11
+# CoordinateSystem = RAS
+# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
+1,9.10143756866455,-5.560246869493113,0.6510976021650148,0,0,0,1,0,1,1,fids_Teixido_length_1,,
+1,-1.92242727703211,7.332753241307408,-3.560892105102539,0,0,0,1,0,1,1,fids_Teixido_length_2,,
+1,-0.7676905393600464,7.938567054765732,-0.40194946472492443,0,0,0,1,0,1,1,fids_Darco_cochwidth_1,,
+1,3.0771733504161034,4.395333901953251,-5.615138053894043,0,0,0,1,0,1,1,fids_Darco_cochwidth_2,,
+1,2.383892791576617,8.219318777265357,-2.8372697477287026,0,0,0,1,0,1,1,fids_Darco_cochheight_1,,vtkMRMLScalarVolumeNode4
+1,0.52550466343191,5.227893265444397,-2.2142331436883205,0,0,0,1,0,1,1,fids_Darco_cochheight_2,,vtkMRMLScalarVolumeNode4
+1,3.018,7.139,-3.57,0,0,0,1,0,1,1,fids_PurcellShim_cochheight_coronal_1,,vtkMRMLScalarVolumeNode3
+1,-1.463,7.139,-0.398,0,0,0,1,0,1,1,fids_PurcellShim_cochheight_coronal_2,,vtkMRMLScalarVolumeNode3
+1,4.077962633108523,3.388417779133178,-3.725802991635561,0,0,0,1,0,1,1,fids_plane_cochlea_base_1,,vtkMRMLScalarVolumeNode3
+1,1.5553539128251899,4.598229477753543,-5.049513577413796,0,0,0,1,0,1,1,fids_plane_cochlea_base_2,,vtkMRMLScalarVolumeNode3
+1,-0.6767788114278304,5.995629501558094,-4.564846215743023,0,0,0,1,0,1,1,fids_plane_cochlea_base_3,,vtkMRMLScalarVolumeNode3
+1,-1.5046973144002642,6.853536706201645,-3.2288925682839995,0,0,0,1,0,1,1,fids_plane_cochlea_base_4,,vtkMRMLScalarVolumeNode3
+1,-0.7747533311833976,7.077590065143832,-0.9873323472642568,0,0,0,1,0,1,1,fids_plane_cochlea_base_5,,vtkMRMLScalarVolumeNode3
+1,1.9258464946404992,6.05006617415629,-0.5416670875747229,0,0,0,1,0,1,1,fids_plane_cochlea_base_6,,vtkMRMLScalarVolumeNode3
+1,2.223087972560272,5.64497719325264,-2.6237556504703505,0,0,0,1,0,1,1,fids_plane_cochlea_base_7,,vtkMRMLScalarVolumeNode3
+1,5.024476812168675,2.9939618329144793,-4.28298204232595,0,0,0,1,0,1,1,fids_Liu_cochlength_1,,vtkMRMLScalarVolumeNode3
+1,-1.6537169172733606,7.765069961343714,-1.0750745313186485,0,0,0,1,0,1,1,fids_Liu_cochlength_2,,vtkMRMLScalarVolumeNode3
+1,2.0241586318027487,6.374483339816896,0.5264477065654418,0,0,0,1,0,1,1,fids_Liu_cochwidth_1,,vtkMRMLScalarVolumeNode3
+1,-1.101296175293701,5.870699091254375,-5.4239526717542,0,0,0,1,0,1,1,fids_Liu_cochwidth_2,,vtkMRMLScalarVolumeNode3
+1,2.4205418180174547,8.217703158796999,-2.842724336875741,0,0,0,1,0,1,1,fids_plane_cochlea_height_1,,vtkMRMLScalarVolumeNode4
+1,0.507200607771594,5.367670130291468,-2.226662274014793,0,0,0,1,0,1,1,fids_plane_cochlea_height_2,,vtkMRMLScalarVolumeNode4
+1,-1.2770548529919878,7.241949055823795,-2.1486614212984363,0,0,0,1,0,1,1,fids_plane_cochlea_height_3,,vtkMRMLScalarVolumeNode3
+1,2.360115087754579,5.708703161718969,-2.5574439169111285,0,0,0,1,0,1,1,fids_plane_cochlea_height_4,,vtkMRMLScalarVolumeNode3
+1,3.3837226734686707,-0.007860480500127665,-1.2189874843017074,0,0,0,1,0,1,1,fids_Sugihara_vest_h1,,vtkMRMLScalarVolumeNode4
+1,5.9924139976501465,4.17550802230835,1.0113248825073242,0,0,0,1,0,1,1,fids_Sugihara_vest_h2,,vtkMRMLScalarVolumeNode4
+1,6.063098430633545,2.15837025642395,0.007009979337453842,0,0,0,1,0,1,1,fids_Sugihara_vest_w1,,vtkMRMLScalarVolumeNode4
+1,3.3972437381744385,3.620286703109741,-0.23325267434120178,0,0,0,1,0,1,1,fids_Sugihara_vest_w2,,vtkMRMLScalarVolumeNode4