Anesthesia_CA1/Sleep/calcium_imaging/8237/3/suite2p/run.log

 >>>>> started run at 13/10/2020 15:06:10{'data_path': ['H:/Sleep/1h'], 'subfolders': [], 'save_path0': 'H:/Sleep/1h', 'fast_disk': 'H:/Sleep/1h', 'input_format': 'tif'}
tif
** Found 1 tifs - converting to binary **
4000 frames of binary, time 8.44 sec.
8000 frames of binary, time 12.38 sec.
12000 frames of binary, time 16.30 sec.
16000 frames of binary, time 20.33 sec.
time 23.14 sec. Wrote 18065 tiff frames to binaries for 1 planes
>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
----------- REGISTRATION
registering 18065 frames
Reference frame, 18.04 sec.
5000/18065 frames, 98.61 sec.
10000/18065 frames, 197.60 sec.
15000/18065 frames, 299.52 sec.
18065/18065 frames, 362.79 sec.
bad frames file path: H:\Sleep\1h\bad_frames.npy
----------- Total 381.33 sec
Registration metrics, 48.38 sec.
----------- ROI DETECTION AND EXTRACTION
Binning movie in chunks of length 30
Binned movie [602,490,482], 12.92 sec.
NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00 
0 ROIs, score=511.43
1000 ROIs, score=30.16
2000 ROIs, score=11.25
Found 2384 ROIs, 56.29 sec
After removing overlaps, 1946 ROIs remain
Masks made in 22.54 sec.
Extracted fluorescence from 1946 ROIs in 18065 frames, 190.10 sec.
NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
----------- Total 288.40 sec.
WARNING: skipping spike detection (ops['spikedetect']=False)
Plane 0 processed in 718.80 sec (can open in GUI).
total = 337.47 sec.
TOTAL RUNTIME 337.88 sec

 >>>>> started run at 13/10/2020 15:19:20{'data_path': ['H:/Sleep/1h', 'H:/Sleep/2h'], 'subfolders': [], 'save_path0': 'H:/Sleep/1h', 'fast_disk': 'H:/Sleep/1h', 'input_format': 'tif'}
FOUND OPS IN H:/Sleep/1h\suite2p\plane0
FOUND BINARIES: H:/Sleep/1h\suite2p\plane0\data.bin
SKIPPING REGISTRATION FOR ALL PLANES...
>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
----------- ROI DETECTION AND EXTRACTION
Binning movie in chunks of length 30
Binned movie [602,490,482], 14.06 sec.
NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00 
0 ROIs, score=511.43
1000 ROIs, score=30.16
2000 ROIs, score=11.25
Found 2384 ROIs, 56.13 sec
After removing overlaps, 1946 ROIs remain
Masks made in 22.48 sec.
Extracted fluorescence from 1946 ROIs in 18065 frames, 182.41 sec.
NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
----------- Total 280.10 sec.
WARNING: skipping spike detection (ops['spikedetect']=False)
Plane 0 processed in 280.39 sec (can open in GUI).
total = 280.69 sec.
TOTAL RUNTIME 281.09 sec