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- >>>>> started run at 30/11/2020 13:28:20{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/7'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/7', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/7', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 4.44 sec.
- 4000 frames of binary, time 6.62 sec.
- 6000 frames of binary, time 8.64 sec.
- time 11.70 sec. Wrote 7663 tiff frames to binaries for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- ----------- REGISTRATION
- registering 7663 frames
- Reference frame, 16.55 sec.
- 2500/7663 frames, 87.42 sec.
- 5000/7663 frames, 185.00 sec.
- 7500/7663 frames, 287.27 sec.
- 7663/7663 frames, 292.79 sec.
- bad frames file path: H:\Sleep\20201029_GCaMP6f_8235_awake\7\bad_frames.npy
- ----------- Total 309.75 sec
- Registration metrics, 102.78 sec.
- ----------- ROI DETECTION AND EXTRACTION
- Binning movie in chunks of length 21
- Binned movie [364,496,498], 10.92 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=518.68
- 1000 ROIs, score=24.37
- 2000 ROIs, score=12.17
- Found 2674 ROIs, 83.05 sec
- After removing overlaps, 2153 ROIs remain
- Masks made in 35.38 sec.
- Extracted fluorescence from 2153 ROIs in 7663 frames, 128.78 sec.
- NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- Total 286.58 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 700.10 sec (can open in GUI).
- total = 390.35 sec.
- TOTAL RUNTIME 391.08 sec
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