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- >>>>> started run at 30/11/2020 11:39:20{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/5'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/5', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/5', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 5.59 sec.
- 4000 frames of binary, time 7.35 sec.
- 6000 frames of binary, time 9.16 sec.
- 8000 frames of binary, time 10.94 sec.
- 10000 frames of binary, time 12.72 sec.
- 12000 frames of binary, time 14.27 sec.
- 14000 frames of binary, time 15.74 sec.
- 16000 frames of binary, time 17.49 sec.
- 18000 frames of binary, time 19.32 sec.
- time 21.57 sec. Wrote 19743 tiff frames to binaries for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- ----------- REGISTRATION
- registering 19743 frames
- Reference frame, 9.31 sec.
- 2500/19743 frames, 45.34 sec.
- 5000/19743 frames, 90.49 sec.
- 7500/19743 frames, 134.46 sec.
- 10000/19743 frames, 178.31 sec.
- 12500/19743 frames, 222.05 sec.
- 15000/19743 frames, 265.95 sec.
- 17500/19743 frames, 309.73 sec.
- 19743/19743 frames, 349.86 sec.
- 19743/19743 frames, 349.91 sec.
- bad frames file path: H:\Sleep\20201029_GCaMP6f_8235_awake\5\bad_frames.npy
- ----------- Total 359.69 sec
- Registration metrics, 42.36 sec.
- ----------- ROI DETECTION AND EXTRACTION
- Binning movie in chunks of length 21
- Binned movie [940,474,490], 13.26 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=729.09
- 1000 ROIs, score=48.11
- 2000 ROIs, score=22.27
- 3000 ROIs, score=13.12
- 4000 ROIs, score=10.31
- Found 4287 ROIs, 74.54 sec
- After removing overlaps, 2973 ROIs remain
- Masks made in 31.83 sec.
- Extracted fluorescence from 2973 ROIs in 19743 frames, 290.01 sec.
- NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- Total 457.51 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 860.32 sec (can open in GUI).
- total = 500.63 sec.
- TOTAL RUNTIME 500.97 sec
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