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- >>>>> started run at 30/11/2020 12:51:44{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/4'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/4', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/4', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 6.56 sec.
- 4000 frames of binary, time 8.61 sec.
- 6000 frames of binary, time 10.55 sec.
- 8000 frames of binary, time 12.67 sec.
- 10000 frames of binary, time 14.55 sec.
- 12000 frames of binary, time 17.62 sec.
- 14000 frames of binary, time 19.65 sec.
- time 21.45 sec. Wrote 15028 frames per binary for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- NOTE: not registered / registration forced with ops['do_registration']>1
- (no previous offsets to delete)
- ----------- REGISTRATION
- registering 15028 frames
- Reference frame, 28.44 sec.
- Registered 2000/15028 in 89.95s
- Registered 4000/15028 in 172.61s
- Registered 6000/15028 in 246.88s
- Registered 8000/15028 in 317.37s
- Registered 10000/15028 in 389.98s
- Registered 12000/15028 in 459.44s
- Registered 14000/15028 in 524.03s
- ----------- Total 586.00 sec
- Registration metrics, 43.36 sec.
- NOTE: applying default C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- ROI DETECTION
- Binning movie in chunks of length 21
- Binned movie [690,478,484], 10.69 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=501.70
- 1000 ROIs, score=29.46
- 2000 ROIs, score=14.81
- 3000 ROIs, score=10.09
- Found 3055 ROIs, 24.17 sec
- After removing overlaps, 2368 ROIs remain
- Masks made in 23.37 sec.
- ----------- Total 59.18 sec.
- ----------- EXTRACTION
- Extracted fluorescence from 2368 ROIs in 15028 frames, 175.44 sec.
- added enhanced mean image
- ----------- Total 182.58 sec.
- ----------- CLASSIFICATION
- ----------- Total 0.03 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 871.71 sec (can open in GUI).
- total = 893.69 sec.
- TOTAL RUNTIME 893.69 sec
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