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- >>>>> started run at 19/11/2020 17:43:11{'data_path': ['H:/Transition_state_new/8238/20201110_GCaMP6f_8238_MMF'], 'subfolders': [], 'save_path0': 'H:/Transition_state_new/8238/20201110_GCaMP6f_8238_MMF', 'fast_disk': 'H:/Transition_state_new/8238/20201110_GCaMP6f_8238_MMF', 'input_format': 'tif'}
- tif
- ** Found 9 tifs - converting to binary **
- 2000 frames of binary, time 4.92 sec.
- 4000 frames of binary, time 6.47 sec.
- 6000 frames of binary, time 8.02 sec.
- 8000 frames of binary, time 9.55 sec.
- 10000 frames of binary, time 11.08 sec.
- time 90.84 sec. Wrote 80481 frames per binary for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- NOTE: not registered / registration forced with ops['do_registration']>1
- (no previous offsets to delete)
- ----------- REGISTRATION
- registering 80481 frames
- Reference frame, 144.40 sec.
- Registered 2000/80481 in 67.61s
- Registered 4000/80481 in 134.73s
- Registered 6000/80481 in 202.75s
- Registered 8000/80481 in 270.99s
- Registered 10000/80481 in 338.31s
- Registered 12000/80481 in 407.63s
- Registered 14000/80481 in 480.76s
- Registered 16000/80481 in 551.03s
- Registered 18000/80481 in 624.29s
- Registered 20000/80481 in 696.64s
- Registered 22000/80481 in 765.70s
- Registered 24000/80481 in 835.45s
- Registered 26000/80481 in 904.30s
- Registered 28000/80481 in 973.19s
- Registered 30000/80481 in 1043.82s
- Registered 32000/80481 in 1112.13s
- Registered 34000/80481 in 1179.36s
- Registered 36000/80481 in 1249.90s
- Registered 38000/80481 in 1318.82s
- Registered 40000/80481 in 1386.18s
- Registered 42000/80481 in 1453.20s
- Registered 44000/80481 in 1525.00s
- Registered 46000/80481 in 1592.63s
- Registered 48000/80481 in 1660.16s
- Registered 50000/80481 in 1727.81s
- Registered 52000/80481 in 1795.80s
- Registered 54000/80481 in 1863.78s
- Registered 56000/80481 in 1931.23s
- Registered 58000/80481 in 2001.08s
- Registered 60000/80481 in 2069.13s
- Registered 62000/80481 in 2139.14s
- Registered 64000/80481 in 2208.82s
- Registered 66000/80481 in 2277.04s
- Registered 68000/80481 in 2346.20s
- Registered 70000/80481 in 2412.62s
- Registered 72000/80481 in 2480.81s
- Registered 74000/80481 in 2549.24s
- Registered 76000/80481 in 2617.82s
- Registered 78000/80481 in 2685.34s
- Registered 80000/80481 in 2752.31s
- ----------- Total 2914.69 sec
- Registration metrics, 46.20 sec.
- NOTE: applying default C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- ROI DETECTION
- Binning movie in chunks of length 21
- Binned movie [3680,490,486], 71.74 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 3.07, threshold 30.67
- 0 ROIs, score=895.62
- 1000 ROIs, score=63.37
- 2000 ROIs, score=39.22
- Found 2709 ROIs, 118.37 sec
- After removing overlaps, 1888 ROIs remain
- Masks made in 18.31 sec.
- ----------- Total 209.50 sec.
- ----------- EXTRACTION
- Extracted fluorescence from 1888 ROIs in 80481 frames, 775.44 sec.
- added enhanced mean image
- ----------- Total 785.64 sec.
- ----------- CLASSIFICATION
- ----------- Total 0.03 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 3957.54 sec (can open in GUI).
- total = 4049.12 sec.
- TOTAL RUNTIME 4049.12 sec
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