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- >>>>> started run at 19/12/2020 13:08:31{'data_path': ['H:/Ctrl_new_concat/20201028_GCaMP6f_8238_awake'], 'subfolders': [], 'save_path0': 'H:/Ctrl_new_concat/20201028_GCaMP6f_8238_awake', 'fast_disk': 'H:/Ctrl_new_concat/20201028_GCaMP6f_8238_awake', 'input_format': 'tif'}
- tif
- ** Found 7 tifs - converting to binary **
- 2000 frames of binary, time 7.48 sec.
- 4000 frames of binary, time 9.53 sec.
- 6000 frames of binary, time 11.34 sec.
- 8000 frames of binary, time 13.27 sec.
- time 111.75 sec. Wrote 67993 tiff frames to binaries for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- ----------- REGISTRATION
- registering 67993 frames
- Reference frame, 113.31 sec.
- 2500/67993 frames, 86.30 sec.
- 5000/67993 frames, 172.91 sec.
- 7500/67993 frames, 257.76 sec.
- 10000/67993 frames, 343.03 sec.
- 12500/67993 frames, 429.29 sec.
- 15000/67993 frames, 515.31 sec.
- 17500/67993 frames, 599.87 sec.
- 20000/67993 frames, 686.22 sec.
- 22500/67993 frames, 774.34 sec.
- 25000/67993 frames, 862.28 sec.
- 27500/67993 frames, 949.55 sec.
- 30000/67993 frames, 1037.62 sec.
- 32500/67993 frames, 1123.88 sec.
- 35000/67993 frames, 1210.44 sec.
- 37500/67993 frames, 1297.86 sec.
- 40000/67993 frames, 1385.35 sec.
- 42500/67993 frames, 1473.66 sec.
- 45000/67993 frames, 1560.01 sec.
- 47500/67993 frames, 1647.26 sec.
- 50000/67993 frames, 1740.37 sec.
- 52500/67993 frames, 1829.89 sec.
- 55000/67993 frames, 1916.45 sec.
- 57500/67993 frames, 2001.47 sec.
- 60000/67993 frames, 2091.29 sec.
- 62500/67993 frames, 2188.06 sec.
- 65000/67993 frames, 2279.85 sec.
- 67500/67993 frames, 2373.19 sec.
- 67993/67993 frames, 2392.75 sec.
- bad frames file path: H:\Ctrl_new_concat\20201028_GCaMP6f_8238_awake\bad_frames.npy
- ----------- Total 2507.85 sec
- Registration metrics, 90.40 sec.
- ----------- ROI DETECTION AND EXTRACTION
- Binning movie in chunks of length 21
- Binned movie [3237,494,476], 123.97 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 2.70, threshold 26.97
- 0 ROIs, score=1299.82
- 1000 ROIs, score=83.51
- 2000 ROIs, score=49.10
- 3000 ROIs, score=34.23
- Found 3891 ROIs, 544.03 sec
- After removing overlaps, 1957 ROIs remain
- Masks made in 30.42 sec.
- Extracted fluorescence from 1957 ROIs in 67993 frames, 835.20 sec.
- NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- Total 1518.55 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 4118.50 sec (can open in GUI).
- total = 1610.65 sec.
- TOTAL RUNTIME 1611.15 sec
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