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- >>>>> started run at 30/11/2020 13:29:25{'data_path': ['H:/Sleep/20201029_GCaMP6f_8235_awake/3'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201029_GCaMP6f_8235_awake/3', 'fast_disk': 'H:/Sleep/20201029_GCaMP6f_8235_awake/3', 'input_format': 'tif'}
- tif
- ** Found 1 tifs - converting to binary **
- 2000 frames of binary, time 9.77 sec.
- 4000 frames of binary, time 12.26 sec.
- 6000 frames of binary, time 14.55 sec.
- 8000 frames of binary, time 17.04 sec.
- 10000 frames of binary, time 19.52 sec.
- 12000 frames of binary, time 21.65 sec.
- time 24.27 sec. Wrote 12240 tiff frames to binaries for 1 planes
- >>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
- ----------- REGISTRATION
- registering 12240 frames
- Reference frame, 22.84 sec.
- 2500/12240 frames, 98.94 sec.
- 5000/12240 frames, 201.81 sec.
- 7500/12240 frames, 293.65 sec.
- 10000/12240 frames, 376.20 sec.
- 12240/12240 frames, 443.01 sec.
- 12240/12240 frames, 443.08 sec.
- bad frames file path: H:\Sleep\20201029_GCaMP6f_8235_awake\3\bad_frames.npy
- ----------- Total 466.49 sec
- Registration metrics, 78.91 sec.
- ----------- ROI DETECTION AND EXTRACTION
- Binning movie in chunks of length 21
- Binned movie [582,504,504], 14.90 sec.
- NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00
- 0 ROIs, score=702.20
- 1000 ROIs, score=28.29
- 2000 ROIs, score=14.72
- 3000 ROIs, score=10.29
- Found 3231 ROIs, 100.15 sec
- After removing overlaps, 2464 ROIs remain
- Masks made in 33.86 sec.
- Extracted fluorescence from 2464 ROIs in 12240 frames, 205.58 sec.
- NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
- ----------- Total 382.94 sec.
- WARNING: skipping spike detection (ops['spikedetect']=False)
- Plane 0 processed in 929.08 sec (can open in GUI).
- total = 462.60 sec.
- TOTAL RUNTIME 462.99 sec
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