|
|
@@ -0,0 +1,66 @@
|
|
|
+
|
|
|
+ >>>>> started run at 18/11/2020 09:18:13{'data_path': ['H:/Transition_state_new/8235/20201116_GCaMP6f_8235_keta'], 'subfolders': [], 'save_path0': 'H:/Transition_state_new/8235/20201116_GCaMP6f_8235_keta', 'fast_disk': 'H:/Transition_state_new/8235/20201116_GCaMP6f_8235_keta', 'input_format': 'tif'}
|
|
|
+tif
|
|
|
+** Found 9 tifs - converting to binary **
|
|
|
+2000 frames of binary, time 3.51 sec.
|
|
|
+4000 frames of binary, time 5.14 sec.
|
|
|
+time 90.18 sec. Wrote 79892 tiff frames to binaries for 1 planes
|
|
|
+>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<
|
|
|
+----------- REGISTRATION
|
|
|
+registering 79892 frames
|
|
|
+Reference frame, 73.36 sec.
|
|
|
+2500/79892 frames, 54.53 sec.
|
|
|
+5000/79892 frames, 108.69 sec.
|
|
|
+7500/79892 frames, 161.51 sec.
|
|
|
+10000/79892 frames, 215.41 sec.
|
|
|
+12500/79892 frames, 269.09 sec.
|
|
|
+15000/79892 frames, 320.64 sec.
|
|
|
+17500/79892 frames, 371.46 sec.
|
|
|
+20000/79892 frames, 421.37 sec.
|
|
|
+22500/79892 frames, 473.26 sec.
|
|
|
+25000/79892 frames, 525.07 sec.
|
|
|
+27500/79892 frames, 576.40 sec.
|
|
|
+30000/79892 frames, 627.13 sec.
|
|
|
+32500/79892 frames, 676.87 sec.
|
|
|
+35000/79892 frames, 726.80 sec.
|
|
|
+37500/79892 frames, 776.72 sec.
|
|
|
+40000/79892 frames, 827.23 sec.
|
|
|
+42500/79892 frames, 876.74 sec.
|
|
|
+45000/79892 frames, 925.29 sec.
|
|
|
+47500/79892 frames, 973.68 sec.
|
|
|
+50000/79892 frames, 1022.56 sec.
|
|
|
+52500/79892 frames, 1072.17 sec.
|
|
|
+55000/79892 frames, 1123.60 sec.
|
|
|
+57500/79892 frames, 1174.21 sec.
|
|
|
+60000/79892 frames, 1224.76 sec.
|
|
|
+62500/79892 frames, 1287.74 sec.
|
|
|
+65000/79892 frames, 1350.52 sec.
|
|
|
+67500/79892 frames, 1406.83 sec.
|
|
|
+70000/79892 frames, 1464.73 sec.
|
|
|
+72500/79892 frames, 1521.61 sec.
|
|
|
+75000/79892 frames, 1577.64 sec.
|
|
|
+77500/79892 frames, 1633.98 sec.
|
|
|
+79892/79892 frames, 1686.39 sec.
|
|
|
+79892/79892 frames, 1686.43 sec.
|
|
|
+bad frames file path: H:\Transition_state_new\8235\20201116_GCaMP6f_8235_keta\bad_frames.npy
|
|
|
+----------- Total 1761.41 sec
|
|
|
+Registration metrics, 42.81 sec.
|
|
|
+----------- ROI DETECTION AND EXTRACTION
|
|
|
+Binning movie in chunks of length 21
|
|
|
+Binned movie [3802,446,446], 56.89 sec.
|
|
|
+NOTE: estimated spatial scale ~12 pixels, time epochs 3.17, threshold 31.68
|
|
|
+0 ROIs, score=1830.37
|
|
|
+1000 ROIs, score=115.76
|
|
|
+2000 ROIs, score=71.99
|
|
|
+3000 ROIs, score=52.48
|
|
|
+4000 ROIs, score=40.45
|
|
|
+Found 5000 ROIs, 364.91 sec
|
|
|
+After removing overlaps, 2789 ROIs remain
|
|
|
+Masks made in 27.85 sec.
|
|
|
+Extracted fluorescence from 2789 ROIs in 79892 frames, 1151.16 sec.
|
|
|
+NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy
|
|
|
+----------- Total 1660.90 sec.
|
|
|
+WARNING: skipping spike detection (ops['spikedetect']=False)
|
|
|
+Plane 0 processed in 3467.10 sec (can open in GUI).
|
|
|
+total = 1705.69 sec.
|
|
|
+TOTAL RUNTIME 1706.12 sec
|
Andrey Formozov