SPL_single_units_reaching_task/code/matlab/H5_ISI.m

% The script calculates the Inter Spike Intervals (ISIs) and plots the
% results in a histogram. The proportion of ISIs violating a threshold
% is also calculated and indicated in the histogram.

% authors: Francesco E. Vaccari
% date: 10/2022 

clear all; clc; close all;
addpath('supportFunctions')
currentFolder = pwd;
parentFolder = fileparts(fileparts(currentFolder));
[filename,path_folder_data] = uigetfile('*.h5','Select a h5 dataset',[parentFolder '\data']);

str = '/DATA'; %it can be either unit_XXX, unit_XXX/condition_YY or unit_XXX/condition_YY/trial_ZZ
threshold = 1; %threshold for violations in ms

[data, all_strings] = get_all_data_from_level_h5_rec([path_folder_data filename],str, {}, {}); %extract data

spikes = data(:,2);

ISIs = cellfun(@diff, spikes, 'UniformOutput', false);
ISIs = cell2mat(ISIs');

violations = length(find(ISIs<threshold)) / numel(ISIs) * 100; %percentage over the total number of ISIs

figure
time = 0:0.5:100;
histogram(ISIs,time);
hold on
xline(threshold,'--')
xLimits = get(gca,'XLim');
yLimits = get(gca,'YLim');
text(xLimits(2)/4, yLimits(2)*2/3, ['Violations (ISI below ' num2str(threshold) 'ms threshold) = ' num2str(violations) '%'])
xlabel('ISI duration (ms)')
ylabel('events num.')
title('ISI')