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example_ephys_bids_conversion
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README.md

Install

Inside a virtual environment (conda or virtualenv or whatever floats your boat ⛵)

This will install BEP032tools and the Neo "bleeding edge"

pip install -r requirements.txt
cd lib/BEP032tools
pip install .[tools]
cd ../python_neo
python setup.py install

pybids config

Because pybids does not yet support ephys or microscopy, we use a modified config for it.

running the conversion

code/01_indexing_source_data.ipynb goes through the sourcedata and creates a listing between each file to convert and the entities that will be associated with it.