MriSequencingPipeline/pipelines/wiedemann_atac_pipeline/pipeline.json

{
    "id": "wiedemann_atac_paired_end",
    "name": "Wiedemann ATAC paired end pipeline",
    "description": "This pipeline processes paired end ATAC data.",
    "steps": [
        {
            "id": "fastqc_initial",
            "name": "FastQC",
            "description": "Performs an initial quality control of sequenced reads.",
            "container": "fastqc",
            "dependencies": [],
            "variables": [
                {
                    "id": "SVG",
                    "name": "SVG images",
                    "description": "Saves all images as vector files instead of bitmaps.",
                    "category": {
                        "tag": "Boolean"
                    }
                }
            ]
        } 
    ]
}