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- FROM python:3.11.6-alpine3.18
- RUN apk -U upgrade && apk add --no-cache openjdk17-jre unzip
- RUN wget 'https://github.com/usadellab/Trimmomatic/files/5854859/Trimmomatic-0.39.zip' && unzip 'Trimmomatic-0.39.zip' && rm 'Trimmomatic-0.39.zip'
- COPY run_trimming.py /run_trimming.py
- ENTRYPOINT ["python", "run_trimming.py"]
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