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- FROM python:3.11.6-alpine3.18
- RUN apk -U upgrade && apk add --no-cache openjdk17-jre unzip perl fontconfig ttf-dejavu
- RUN wget 'https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.12.1.zip' && unzip 'fastqc_v0.12.1.zip' && rm 'fastqc_v0.12.1.zip'
- COPY run_fastqc.py /run_fastqc.py
- ENTRYPOINT ["python", "run_fastqc.py"]
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