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@@ -1,7 +1,7 @@
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{
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"id": "wiedemann_atac_paired_end",
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"name": "Wiedemann ATAC paired end pipeline",
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- "description": "<p>This pipeline processes paired end ATAC data. The input is expected as gzipped FASTQ files (.fq.gz / .fastq.gz) and might be organised in sub-folders.</p>",
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+ "description": "<p>This pipeline processes paired end ATAC data.</p><p><b>Input specifications</b><br />The input is expected as gzipped FASTQ files (<var>.fq.gz</var> / <var>.fastq.gz</var>) and might be organised in sub-folders. Paired reads must always reside in the same folder and end with <var>_1</var> or <var>_2</var> respectively.</p><p><b>System requirements</b><br />64 GB of RAM are recommended for pipeline execution.</p>",
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"steps": [
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{
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"id": "qc_initial",
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@@ -13,7 +13,7 @@
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{
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"id": "ADAPTERS",
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"name": "Adapter sequences",
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- "description": "A custom list of sequencing adapters. The global data repository must contain a file called <var>adapters.txt</var> at its root.",
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+ "description": "A custom list of sequencing adapters. The global data repository must contain a file called <var>qc_adapters.txt</var> at its root.",
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"category": {
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"tag": "Global"
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}
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@@ -74,7 +74,7 @@
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{
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"id": "ADAPTERS",
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"name": "Adapter sequences",
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- "description": "A custom list of sequencing adapters. The global data repository must contain a file called <var>adapters.txt</var> at its root.",
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+ "description": "A custom list of sequencing adapters. The global data repository must contain a file called <var>qc_adapters.txt</var> at its root.",
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"category": {
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"tag": "Global"
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}
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