Comparative_MEA_dataset/Codes/meaRtools/plate_layout_Axion48_LAa.R

# Laura Aarnos 230718
# Axion 48 plate layout for meaRtools

#library(IGM.MEA)
library(meaRtools) #attach meaRtools after IGM.MEA to get right parameter names

# name your plate layout - the name goes between ''

my.name <- 'Axion48' # e.g. '1-electrode'

# create plate layout for single electrode

new_platelayout = list(n_well = 48, # number of wells 
                          wells = c('A1','A2','A3','A4','A5','A6','A7','A8','B1','B2','B3','B4','B5','B6','B7','B8',
                                    'C1','C2','C3','C4','C5','C6','C7','C8','D1','D2','D3','D4','D5','D6','D7','D8',
                                    'E1','E2','E3','E4','E5','E6','E7','E8','F1','F2','F3','F4','F5','F6','F7','F8'), # names of those wells, e.g. 'w1'
                          n_well_r = 6, # number of wells / row
                          n_well_c = 8, # number of wells / col
                          layout = c(6, 8), # layout when plotting c(row,col), e.g. c(1,1)
                          n_elec_r = 4, # number of electrodes / row
                          n_elec_c = 4, # number of electrodes /col
                          xlim = c(-100, 13600), # xlimits for plotting, e.g. c(-1,2)
                          ylim = c(0, 10100), # ylimits for plotting, e.g. c(-1,2)
                          spacing = 200,  # distance (um) separating electrodes
                          corr_breaks = 0 # vector of correlation distances (I used 0)
                          )

add_plateinfo(my.name, new_platelayout)