Comparative_MEA_dataset/Codes/meaRtools/plate_layout_Axion12_LAa.R

# Laura Aarnos 211118
# Create new plate layout for meaRtools - Axion12
# Original code from meaRtools: Reading in MEA data

#library(IGM.MEA)
library(meaRtools) #attach meaRtools after IGM.MEA to get right parameter names

# name your plate layout - the name goes between ''

my.name <- 'Axion12' # e.g. '1-electrode'

# create plate layout for single electrode

new_platelayout = list(n_well = 12, # number of wells 
                          wells = c('A1','A2','A3','A4','B1','B2','B3','B4',
                                    'C1','C2','C3','C4'), # names of those wells, e.g. 'w1'
                          n_well_r = 4, # number of wells / row
                          n_well_c = 3, # number of wells / col
                          layout = c(3, 4), # layout when plotting c(row,col), e.g. c(1,1)
                          n_elec_r = 8, # number of electrodes / row
                          n_elec_c = 8, # number of electrodes /col
                          xlim = c(-100, 7100), # xlimits for plotting, e.g. c(-1,2)
                          ylim = c(0, 5300), # ylimits for plotting, e.g. c(-1,2)
                          spacing = 200,  # distance (um) separating electrodes
                          corr_breaks = 0 # vector of correlation distances (I used 0)
                          )

add_plateinfo(my.name, new_platelayout)