gin commit from nit-ope-de04

New files: 4
Modified files: 5
Deleted files: 2

ephys_nix/participants.json

@@ -1,29 +1,29 @@
 {
-  "SubjectID": {
+  "subject_id": {
     "Description": "Short identifier for monkey (e.g., used in file names)"
   },
-  "Species": {
+  "species": {
     "Description": "binomial species name (genus, species with genus)"
   },
-  "Sex": {
+  "sex": {
     "Description": "Sex of the animal (male/female)"
   },
-  "Birthdate": {
+  "birthdate": {
     "Description": "Date of birth"
   },
-  "Handedness": {
+  "handedness": {
     "Description": "Trained hand (left and/or right)"
   },
-  "SurgeryDate": {
+  "surgerydate": {
     "Description": "Date of the surgery"
   },
-  "Disabilities": {
+  "disabilities": {
     "Description": "Comment on existing disabilities"
   },
-  "Character": {
+  "character": {
     "Description": "Comment on the general character/personality"
   },
-  "GivenName": {
+  "given_name": {
     "Description": "Given Name"
   }
-}
+}

ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-101210_coordsystem.json

@@ -0,0 +1,5 @@
+{
+  "ephysCoordinateSystem": "Pixels”,
+  "ephysCoordinateUnits": "pixels",
+  "ephysCoordinateSystemPhoto": "bids:ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_photo.png",
+}

ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv

@@ -1,2 +1,2 @@
-probe_id	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
-Prob-8596-001139	utah array	M1	https://www.nature.com/articles/sdata201855/figures/1	right	Blackrock Microsystems	8596-001139	100	1.5	4	4	mm	Pt/Au	0.000025	0.04	m	RIKEN-BSI, Japan
+probe_id	type	location	x	y	z	alpha_rotation	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
+Prob-8596-001139	utah array	M1	211	345	n/a	239	right	Blackrock Microsystems	8596-001139	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan

ephys_nix/sub-i/sub-i_sessions.json

@@ -1,23 +1,32 @@
 {
-  "SessionId": {
+  "session_id": {
     "Description": "Unique identifier of the session"
   },
-  "SessionQuality": {
+  "session_quality": {
     "Description": "General quality of the session (excellent/good/ok/bad)"
   },
-  "DataQuality": {
+  "data_quality": {
     "Description": "Quality of the recorded data (excellent/good/ok/bad)"
   },
-  "#Trials": {
+  "number_of_trials": {
     "Description": "Number of trial within the session"
   },
-  "Comment": {
+  "comment": {
     "Description": "Comment by the experimenter"
   },
-  "Weekday": {
+  "weekday": {
     "Description": "Day of the week the recording was performed (monday,tuesday,...)"
+    "Levels": {
+      "monday" : "The first day of the week",
+      "tuesday": "The second day of the week",
+      "wednesday": "The third day of the week",
+      "thursday" : "The fourth day of the week",
+      "friday": "The fifth day of the week",
+      "saturday": "The sixth day of the week",
+      "sunday": "The seventh day of the week"
+    }
   },
-  "Noisy": {
+  "noisy": {
     "Description": "Was noise observed in the data during the recording (yes/no)"
   }
-}
+}

ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_coordsystem.json

@@ -0,0 +1,5 @@
+{
+  "ephysCoordinateSystem": "Pixels”,
+  "ephysCoordinateUnits": "pixels",
+  "ephysCoordinateSystemPhoto": "bids:ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_photo.png",
+}

ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv

@@ -1,2 +1,2 @@
-probe_id	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
-prob-1025-0503	utah array	M1	https://www.nature.com/articles/sdata201855/figures/1	right	Blackrock Microsystems	1025-0503	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan
+probe_id	type	location	hemisphere	x	y	z	alpha_rotation	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
+prob-1025-0503	utah array	M1	right	166	212	n/a	216	Blackrock Microsystems	1025-0503	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan

ephys_nix/sub-l/sub-l_sessions.json

@@ -1,23 +1,32 @@
 {
-  "SessionId": {
+  "session_id": {
     "Description": "Unique identifier of the session"
   },
-  "SessionQuality": {
+  "session_quality": {
     "Description": "General quality of the session (excellent/good/ok/bad)"
   },
-  "DataQuality": {
+  "data_quality": {
     "Description": "Quality of the recorded data (excellent/good/ok/bad)"
   },
-  "#Trials": {
+  "number_of_trials": {
     "Description": "Number of trial within the session"
   },
-  "Comment": {
+  "comment": {
     "Description": "Comment by the experimenter"
   },
-  "Weekday": {
+  "weekday": {
     "Description": "Day of the week the recording was performed (monday,tuesday,...)"
+    "Levels": {
+      "monday" : "The first day of the week",
+      "tuesday": "The second day of the week",
+      "wednesday": "The third day of the week",
+      "thursday" : "The fourth day of the week",
+      "friday": "The fifth day of the week",
+      "saturday": "The sixth day of the week",
+      "sunday": "The seventh day of the week"
+    }
   },
-  "Noisy": {
+  "noisy": {
     "Description": "Was noise observed in the data during the recording (yes/no)"
   }
-}
+}

ephys_nix/sub-l/sub-l_sessions.tsv

@@ -1,3 +1,2 @@
-"session_id
-"	session_quality	data_quality	#_trials	comment	weekday	noisy
+session_id	session_quality	data_quality	number_of_trials	comment	weekday	noisy
 101210	excellent	good	204	n/a	friday	yes

ephys_nix/tasks.json

@@ -1,12 +0,0 @@
-{
-  "TaskID": {
-    "Description": "Unique identifier of the task",
-    "Level": {
-      "r2g": {
-        "Description": "A task that involves the reaching of an object and holding it for a specific time",
-        "LongName": "Reach-to-Grasp",
-        "task_type": "two-cue"
-      }
-    }
-  }
-}

ephys_nix/tasks.tsv

@@ -1,2 +0,0 @@
-task_name
-task-r2g