anesthesia_bats/Ephys data/Fig6C-Fig7A-B.m

close all;
clear;
% boxplots for context effect index 
load('all_ce.mat')
aw_=all_ce(:,1)==1; n_aw=sum(aw_);
an_=all_ce(:,1)==2; n_an=sum(an_);
chi_=all_ce(:,1)==3; n_chi=sum(chi_);

nav=all_ce(:,2:3);
com=all_ce(:,4:5);

% comparisons 
y1=nan(117,4);
y2=nan(117,4);

y1(1:n_aw,1:2)=nav(aw_,:);
y1(1:n_an,3:4)=nav(an_,:);

y2(1:n_aw,1:2)=com(aw_,:);
y2(1:n_an,3:4)=com(an_,:);

y3=[(y1(:,2)-y1(:,1))./2,(y2(:,2)-y2(:,1))./2,(y1(:,4)-y1(:,3))./2,(y2(:,4)-y2(:,3))./2] ;


%% plotting 
red =[0.8500,0.3250, 0.0980];
blue=[0,0.4470,0.7410];
red_light=[1,0.5,0.5].*red;
blue_light=[1,0.5,0.5].*blue;
colors=[blue;blue_light;red;red_light];
wid=160;
hei=180;

x = 1:4;

figure(1); set(gcf,'Position',[400 200 wid hei])
ax = axes();
hold(ax);
for i=1:4
    h=boxchart(x(i)*ones(size(y1(:,i))), y1(:,i), 'BoxFaceColor', colors(i,:),'Notch','on');
    h.MarkerStyle='.';
    h.MarkerColor=colors(i,:);
end
hold on
plot(1:2,nanmedian(y1(:,1:2)),'-o','LineWidth',1,'Color',blue,'MarkerSize',3,'MarkerFaceColor',blue)
plot(3:4,nanmedian(y1(:,3:4)),'-o','LineWidth',1,'Color',red,'MarkerSize',3,'MarkerFaceColor',red)
hold off
xlim([0.5 4.5])
ylabel('echolocation effect')
xticklabels({'match','mismatch','match','mismatch'});

set(gca, 'box', 'off')
set(gca, 'Color','none')
set(gca,'linewidth',1);set(gca,'fontsize',8);

%% add stats 
pv1=signrank(y1(:,1),y1(:,2));
pv2=signrank(y1(:,3),y1(:,4));
pv3=ranksum(y1(:,1),y1(:,3));
pv4=ranksum(y1(:,2),y1(:,4));

xt = get(gca, 'XTick');
line1=0.45;
line2=0.65;
line3=0.85;

sl=0.75; 
% plot lines for comparison 
hold on 
plot(xt(1:2), [1 1]*line1, '-k','LineWidth',sl) 
plot([1;1]*xt(1),[line1,line1-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(2),[line1,line1-0.05],'-k', 'LineWidth',sl);

plot(xt(3:4), [1 1]*line1, '-k','LineWidth',sl) 
plot([1;1]*xt(3),[line1,line1-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(4),[line1,line1-0.05],'-k', 'LineWidth',sl);

plot([xt(1) xt(3)], [1 1]*line2, '-k','LineWidth',sl) 
plot([1;1]*xt(1),[line2,line2-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(3),[line2,line2-0.05],'-k', 'LineWidth',sl);

plot([xt(2) xt(4)], [1 1]*line3, '-k','LineWidth',sl) 
plot([1;1]*xt(2),[line3,line3-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(4),[line3,line3-0.05],'-k', 'LineWidth',sl);

ylim([-1 1])

% plot level of significance
if pv1 <= 0.05 && pv1 > 0.01
    text(mean(xt(1:2))-0.025, line1+0.05, '*')
elseif pv1 <=0.01 && pv1 > 0.001
    text(mean(xt(1:2))-0.05, line1+0.05, '**')
elseif pv1 <= 0.001
    text(mean(xt(1:2))-0.15, line1+0.05, '***')
else 
    text(mean(xt(1:2))-0.05, line1+0.1, 'ns','FontSize',8)
end

if pv2 <= 0.05 && pv2 > 0.01
    text(mean(xt(3:4))-0.025, line1+0.05, '*')
elseif pv2 <=0.01 && pv2 > 0.001
    text(mean(xt(3:4))-0.05, line1+0.05, '**')
elseif pv2 <= 0.001
    text(mean(xt(3:4))-0.15, line1+0.05, '***')
else 
    text(mean(xt(3:4))-0.05, line1+0.1, 'ns','FontSize',8)
end


if pv3 <= 0.05 && pv3 > 0.01
    text(mean(xt(1:3))-0.025, line2+0.05, '*')
elseif pv3 <=0.01 && pv3 > 0.001
    text(mean(xt(1:3))-0.05, line2+0.05, '**')
elseif pv3 <= 0.001
    text(mean(xt(1:3))-0.15, line2+0.05, '***')
else 
    text(mean(xt(1:3))-0.05, line2+0.1, 'ns','FontSize',8)
end


if pv4 <= 0.05 && pv4 > 0.01
    text(mean(xt(2:4))-0.025, line3+0.05, '*')
elseif pv4 <=0.01 && pv4 > 0.001
    text(mean(xt(2:4))-0.05, line3+0.05, '**')
elseif pv4 <= 0.001
    text(mean(xt(2:4))-0.15, line3+0.05, '***')
else 
    text(mean(xt(2:4))-0.05, line3+0.1, 'ns','FontSize',8)
end

exportgraphics(gcf,'E:\Users\User\Desktop\delay paper\anesthetized\figures_paper\ce_nav.pdf',...
    'Resolution',300','ContentType','vector','BackgroundColor','none')

%% plotting number 2 
figure(2); set(gcf,'Position',[400 200 wid hei])

ax = axes();
hold(ax);

for i=1:4
    h=boxchart(x(i)*ones(size(y2(:,i))), y2(:,i), 'BoxFaceColor', colors(i,:),'Notch','on');
    h.MarkerStyle='.';
    h.MarkerColor=colors(i,:);
end
hold on
plot(1:2,nanmedian(y2(:,1:2)),'-o','LineWidth',1,'Color',blue,'MarkerSize',3,'MarkerFaceColor',blue)
plot(3:4,nanmedian(y2(:,3:4)),'-o','LineWidth',1,'Color',red,'MarkerSize',3,'MarkerFaceColor',red)
hold off
xlim([0.5 4.5])
ylabel('communication effect')
xticklabels({'match','mismatch','match','mismatch'});

set(gca, 'box', 'off')
set(gca, 'Color','none')
set(gca,'linewidth',1);set(gca,'fontsize',8);

%% add stats 
pv1=signrank(y2(:,1),y2(:,2));
pv2=signrank(y2(:,3),y2(:,4));
pv3=ranksum(y2(:,1),y2(:,3));
pv4=ranksum(y2(:,2),y2(:,4));

xt = get(gca, 'XTick');

% plot lines for comparison 
hold on 
plot(xt(1:2), [1 1]*line1, '-k','LineWidth',sl) 
plot([1;1]*xt(1),[line1,line1-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(2),[line1,line1-0.05],'-k', 'LineWidth',sl);

plot(xt(3:4), [1 1]*line1, '-k','LineWidth',sl) 
plot([1;1]*xt(3),[line1,line1-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(4),[line1,line1-0.05],'-k', 'LineWidth',sl);

plot([xt(1) xt(3)], [1 1]*line2, '-k','LineWidth',sl) 
plot([1;1]*xt(1),[line2,line2-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(3),[line2,line2-0.05],'-k', 'LineWidth',sl);

plot([xt(2) xt(4)], [1 1]*line3, '-k','LineWidth',sl) 
plot([1;1]*xt(2),[line3,line3-0.05],'-k', 'LineWidth',sl);
plot([1;1]*xt(4),[line3,line3-0.05],'-k', 'LineWidth',sl);

ylim([-1 1])

% plot level of significance
if pv1 <= 0.05 && pv1 > 0.01
    text(mean(xt(1:2))-0.025, line1+0.05, '*')
elseif pv1 <=0.01 && pv1 > 0.001
    text(mean(xt(1:2))-0.05, line1+0.05, '**')
elseif pv1 <= 0.001
    text(mean(xt(1:2))-0.15, line1+0.05, '***')
else 
    text(mean(xt(1:2))-0.05, line1+0.1, 'ns','FontSize',8)
end

if pv2 <= 0.05 && pv2 > 0.01
    text(mean(xt(3:4))-0.025, line1+0.05, '*')
elseif pv2 <=0.01 && pv2 > 0.001
    text(mean(xt(3:4))-0.05, line1+0.05, '**')
elseif pv2 <= 0.001
    text(mean(xt(3:4))-0.15, line1+0.05, '***')
else 
    text(mean(xt(3:4))-0.05, line1+0.1, 'ns','FontSize',8)
end


if pv3 <= 0.05 && pv3 > 0.01
    text(mean(xt(1:3))-0.025, line2+0.05, '*')
elseif pv3 <=0.01 && pv3 > 0.001
    text(mean(xt(1:3))-0.05, line2+0.05, '**')
elseif pv3 <= 0.001
    text(mean(xt(1:3))-0.15, line2+0.05, '***')
else 
    text(mean(xt(1:3))-0.05, line2+0.1, 'ns','FontSize',8)
end


if pv4 <= 0.05 && pv4 > 0.01
    text(mean(xt(2:4))-0.025, line3+0.05, '*')
elseif pv4 <=0.01 && pv4 > 0.001
    text(mean(xt(2:4))-0.05, line3+0.05, '**')
elseif pv4 <= 0.001
    text(mean(xt(2:4))-0.15, line3+0.05, '***')
else 
    text(mean(xt(2:4))-0.05, line3+0.1, 'ns','FontSize',8)
end

exportgraphics(gcf,'E:\Users\User\Desktop\delay paper\anesthetized\figures_paper\ce_com.pdf',...
    'Resolution',300','ContentType','vector','BackgroundColor','none')

%% plotting number 3 
figure(3); set(gcf,'Position',[400 200 wid hei])

ax = axes();
hold(ax);

for i=1:4
    h=boxchart(x(i)*ones(size(y3(:,i))), y3(:,i), 'BoxFaceColor', colors(i,:),'Notch','on');
    h.MarkerStyle='.';
    h.MarkerColor=colors(i,:);
end
hold on
plot(1:2,nanmedian(y3(:,1:2)),'-o','LineWidth',1,'Color',blue,'MarkerSize',3,'MarkerFaceColor',blue)
plot(3:4,nanmedian(y3(:,3:4)),'-o','LineWidth',1,'Color',red,'MarkerSize',3,'MarkerFaceColor',red)
hold off
xlim([0.5 4.5])
ylabel('s.s.s.')
xticklabels({'ech','com','ech','com'});

set(gca, 'box', 'off')
set(gca, 'Color','none')
set(gca,'linewidth',1);set(gca,'fontsize',8);

%% add stats 
pv1=signrank(y3(:,1),y3(:,2));
pv2=signrank(y3(:,3),y3(:,4));
pv3=ranksum(y3(:,1),y3(:,3));
pv4=ranksum(y3(:,2),y3(:,4));
pv5=signrank(y3(:,1));
pv6=signrank(y3(:,2));
pv7=signrank(y3(:,3));
pv8=signrank(y3(:,4));

xt = get(gca, 'XTick');

% plot lines for comparison 
line1=0.45;

hold on 
plot(xt(1:2), [1 1]*line1, '-k','LineWidth',sl) 
plot([1;1]*xt(1),[line1,line1-0.03],'-k', 'LineWidth',sl);
plot([1;1]*xt(2),[line1,line1-0.03],'-k', 'LineWidth',sl);

plot(xt(3:4), [1 1]*line1, '-k','LineWidth',sl) 
plot([1;1]*xt(3),[line1,line1-0.03],'-k', 'LineWidth',sl);
plot([1;1]*xt(4),[line1,line1-0.03],'-k', 'LineWidth',sl);


ylim([-0.5 0.55])

% plot level of significance
if pv1 <= 0.05 && pv1 > 0.01
    text(mean(xt(1:2))-0.025, line1+0.05, '*')
elseif pv1 <=0.01 && pv1 > 0.001
    text(mean(xt(1:2))-0.05, line1+0.05, '**')
elseif pv1 <= 0.001
    text(mean(xt(1:2))-0.15, line1+0.05, '***')
else 
    text(mean(xt(1:2))-0.05, line1+0.1, 'ns','FontSize',8)
end

if pv2 <= 0.05 && pv2 > 0.01
    text(mean(xt(3:4))-0.025, line1+0.05, '*')
elseif pv2 <=0.01 && pv2 > 0.001
    text(mean(xt(3:4))-0.05, line1+0.05, '**')
elseif pv2 <= 0.001
    text(mean(xt(3:4))-0.15, line1+0.05, '***')
else 
    text(mean(xt(3:4))-0.05, line1+0.1, 'ns','FontSize',8)
end

% add stats against null distribution 
line0=-0.45;
if pv5 <= 0.05 && pv5 > 0.01
    text(xt(1), line0, '*','HorizontalAlignment','center')
elseif pv5 <=0.01 && pv5 > 0.001
    text(xt(1), line0, '**','HorizontalAlignment','center')
elseif pv5 <= 0.001
    text(xt(1), line0, '***','HorizontalAlignment','center')
else 
    text(xt(1), line0, 'ns','FontSize',8,'HorizontalAlignment','center')
end

if pv6 <= 0.05 && pv6 > 0.01
    text(xt(2), line0, '*','HorizontalAlignment','center')
elseif pv6 <=0.01 && pv6 > 0.001
    text(xt(2), line0, '**','HorizontalAlignment','center')
elseif pv6 <= 0.001
    text(xt(2), line0, '***','HorizontalAlignment','center')
else 
    text(xt(2), line0, 'ns','FontSize',8,'HorizontalAlignment','center')
end

if pv7 <= 0.07 && pv7 > 0.01
    text(xt(3), line0, '*','HorizontalAlignment','center')
elseif pv7 <=0.01 && pv7 > 0.001
    text(xt(3), line0, '**','HorizontalAlignment','center')
elseif pv7 <= 0.001
    text(xt(3), line0, '***','HorizontalAlignment','center')
else 
    text(xt(3), line0, 'ns','FontSize',8,'HorizontalAlignment','center')
end

if pv8 <= 0.05 && pv8 > 0.01
    text(xt(4), line0, '*','HorizontalAlignment','center')
elseif pv8 <=0.01 && pv8 > 0.001
    text(xt(4), line0, '**','HorizontalAlignment','center')
elseif pv8 <= 0.001
    text(xt(4), line0, '***','HorizontalAlignment','center')
else 
    text(xt(4), line0+0.03, 'ns','FontSize',8,'HorizontalAlignment','center')
end
% l=yline(0,'Color',[0.6 0.6 0.6], 'LineWidth',2);
% uistack(l,'bottom')

exportgraphics(gcf,'E:\Users\User\Desktop\delay paper\anesthetized\figures_paper\dd_boxplot.pdf',...
    'Resolution',300','ContentType','vector','BackgroundColor','none')