README.md

@@ -1,7 +1,19 @@
-# Project <insert name>
+# AOMIC Functional Connectivity
 
-## Dataset structure
+This repository contains preprocessing functional connectivity data [for the AOMIC dataset](https://nilab-uva.github.io/AOMIC.github.io/).
+If you want to learn more about this dataset, check out [the paper](https://www.nature.com/articles/s41597-021-00870-6).
 
-- All inputs (i.e. building blocks from other sources) are located in
-  `inputs/`.
-- All custom code is located in `code/`.
+## Getting the data
+
+Clone the datalad dataset with the preprocessed connectomes from the AOMIC dataset:
+
+```sh
+datalad clone git@gin.g-node.org:/LeSasse/aomic-fc.git
+```
+Obtain the connnectomes from the ID1000 movie-watching data processed using the 
+Schaefer 100 cortical parcellation and the Tian sub-cortical parcellation with
+32 areas:
+```sh
+cd aomic-fc
+datalad get junifer_storage/JUNIFER_AOMIC_TSV_CONNECTOMES/ID1000/ID1000_BOLD_parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC_moviewatching.tsv
+```

junifer_storage/JUNIFER_AOMIC_TSV_CONNECTOMES/FS_STATS.txt

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+../../.git/annex/objects/xP/02/MD5E-s735573--d47e6773cd3a15a93682d62ab45666ad.txt/MD5E-s735573--d47e6773cd3a15a93682d62ab45666ad.txt

junifer_storage/JUNIFER_AOMIC_TSV_CONNECTOMES/ID1000/ID1000_participants.tsv

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+../../../.git/annex/objects/KZ/14/MD5E-s129230--2f575f14c5bba6b07d095d87ab474d6f.tsv/MD5E-s129230--2f575f14c5bba6b07d095d87ab474d6f.tsv

junifer_storage/JUNIFER_AOMIC_TSV_CONNECTOMES/PIOP1/PIOP1_participants.tsv

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+../../../.git/annex/objects/G3/Zz/MD5E-s12885--33ddf500cd12f407453c3f17b338e64c.tsv/MD5E-s12885--33ddf500cd12f407453c3f17b338e64c.tsv

junifer_storage/JUNIFER_AOMIC_TSV_CONNECTOMES/PIOP2/PIOP2_participants.tsv

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+../../../.git/annex/objects/FJ/9x/MD5E-s12725--e49b25c774f936755cad37ba2284c3c7.tsv/MD5E-s12725--e49b25c774f936755cad37ba2284c3c7.tsv