URUMETRICS-CODE/example/example_pipeline.sh

example_dir=/scratch2/whavard/CODE/LAAC/URUMETRICS/dat/data_set/recordings/original/renamed;
dataset="URUMETRICS-TEST-WILLIAM"

# For each example directory (i.e. name of the directory is a date, 20221001, 20221002, etc.)
for dir_name in $example_dir/*; do
    today=$( basename $dir_name );

    echo -e "\t${today}"

    # Clone data set
    echo -e "\tCloning..."
    datalad install -r git@gin.g-node.org:/LAAC-LSCP/${dataset}.git
    cd ${dataset}

    # Unlock necessary file (metadata, messages, and metrics)
    echo -e "\tUnlocking..."
    datalad get extra/messages/definition
    datalad get extra/metrics && datalad unlock extra/metrics
    datalad get metadata && datalad unlock metadata

    # Prepare repository (create necessary directories)
    echo -e "\tPreparing..."
    python -u scripts/URUMETRICS-CODE/import_data/prepare_data_set.py

    # Copy data
    echo -e "\tCopying data"
    mkdir -p recordings/raw/${today}
    cp ${example_dir}/${today}/*.wav  recordings/raw/${today}
    cp ${example_dir}/${today}/VTC_${today}.rttm annotations/vtc/raw
    cp ${example_dir}/${today}/VTC_${today}.vcm annotations/vcm/raw
    cp ${example_dir}/${today}/ALICE_${today}.txt annotations/alice/raw

    # Save raw data
    echo -e "\tSaving and pushing recordings and annotations"
    datalad save recordings -m "Added new recordings for date ${today}"
    datalad save annotations/*/raw -m "Added raw annotations for date ${today}"
    datalad push --to origin

    # Import recordings
    echo -e "\tImporting new recordings"
    python -u scripts/URUMETRICS-CODE/import_data/import_recordings.py --experiment Uruguayan_Chatbot_2022

    # Import annotations
    echo -e "\tImporting VTC/VCM/ALICE annotations"
    python -u scripts/URUMETRICS-CODE/import_data/import_annotations.py --annotation-type VTC --annotation-file VTC_${today}.rttm
    python -u scripts/URUMETRICS-CODE/import_data/import_annotations.py --annotation-type VCM --annotation-file VTC_${today}.vcm
    python -u scripts/URUMETRICS-CODE/import_data/import_annotations.py --annotation-type ALICE --annotation-file ALICE_${today}.txt

    echo -e "\tSaving and pushing"
    datalad save annotations/*/converted -m "Converted RAW annotations for date ${today}"
    datalad save metadata -m "Imported RAW annotations for date ${today}"
    datalad push --to origin
    datalad unlock metadata

    # Compute turn annotations
    echo -e "\tComputing CONVERSATIONS annotations"
    python scripts/URUMETRICS-CODE/compute_annotations/compute_derived_annotations.py --annotation-type CONVERSATIONS --save-path annotations/conversations/raw/

    # Import turn annotations
    echo -e "\tImporting CONVERSATIONS annotations"
    python -u scripts/URUMETRICS-CODE/import_data/import_annotations.py --annotation-type CONVERSATIONS --annotation-file CONVERSATIONS_VTC_${today}.csv --recordings-from-annotation-file VTC_${today}.rttm

    echo -e "\tComputing ACOUSTIC annotations"
    python scripts/URUMETRICS-CODE/compute_annotations/compute_derived_annotations.py --annotation-type ACOUSTIC --save-path annotations/acoustic/raw/ --target-sr 16000

    # Import turn annotations
    echo -e "\tImporting ACOUSTIC annotations"
    python -u scripts/URUMETRICS-CODE/import_data/import_annotations.py --annotation-type ACOUSTIC --annotation-file ACOUSTIC_VTC_${today}.csv --recordings-from-annotation-file VTC_${today}.rttm

    echo -e "\tSaving and pushing"
    datalad save annotations/*/raw -m "Imported DERIVED RAW annotations for date ${today}"
    datalad save annotations/*/converted -m "Convected DERIVED annotations for date ${today}"
    datalad save metadata -m "Imported DERIVED CONVERTED annotations for date ${today}"
    datalad unlock metadata

    # Compute metrics
    echo -e "\tComputing metrics"
    python -u scripts/URUMETRICS-CODE/compute_metrics/metrics.py

    # Generating messages
    echo -e "\tGenerating messages"
    python -u scripts/URUMETRICS-CODE/generate_messages/messages.py --date ${today}

    # Save data
    echo -e "\tSaving and pushing"
    datalad save extra/metrics -m "Computed new metrics for date ${today}"
    datalad save extra/messages/generated -m "Message generated for date ${today}"
    datalad save .
    datalad push --to origin

    # Uninstalling
    echo -e "\tUninstalling"
    git annex dead here
    datalad push --to origin
    cd ..
    datalad remove -d ${dataset}
done;