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@@ -2,9 +2,11 @@
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This repository contains the raw behavioral and pre-processed calcium imaging data for the publication 'Excitatory neurons of the anterior cingulate cortex encode chosen actions and their outcomes rather than cognitive state' by Jendryka et al.
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-The files were compressed into zip files and are stored in the folders 'behavior' and 'miniscope', respectively.
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+The files were compressed into zip files and are stored in the folders **'behavior'** and **'miniscope'**, respectively.
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+### Behavioral data
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The behavioral data consists of .csv files for each animal and experimental session with three values (index number, timestamp in ms, task variable). The first 4 lines hold information about the session, i.e. 'experiment name' (blank), 'Task name, Subject ID, Project (blank), Start date.
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-The calcium imaging data consists of timestamp files (timestamp_*.dat or timestamp_*.csv) and pre-processed calcium traces (traces_*.mat). The timestamp dat files have 4 values in each row: 'camNum' (0, not relevant), 'frameNum' (index number of recorded frame), 'sysClock' (timestamp in ms of recorded frame), 'buffer' (1, not relevant). The timestamp csv files have 3 values in each row: 'Frame Number' (index number of recorded frame), 'Time Stamp (ms)' (timestamp in ms of recorded frame), 'Buffer Index' (0, not relevant).
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+### Calcium imaging data
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+The calcium imaging data consists of timestamp files (timestamp.dat or timestamp.csv) and pre-processed calcium traces (traces.mat) for each animal and session. The timestamp dat files have 4 values in each row: 'camNum' (0, not relevant), 'frameNum' (index number of recorded frame), 'sysClock' (timestamp in ms of recorded frame), 'buffer' (1, not relevant). The timestamp csv files have 3 values in each row: 'Frame Number' (index number of recorded frame), 'Time Stamp (ms)' (timestamp in ms of recorded frame), 'Buffer Index' (0, not relevant).
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The calcium trace files contain three variables: 'traces' (2-D array, pre-processed calcium signal trace, dimensions: number of cells X number of frames), 'filters' (3-D array, spatial distribution of pre-processed calcium signal, number of frames according to length of FOV, number of frames according to width of FOV, number of cells). The third variable 'valid' can be ignored.
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