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@@ -38,7 +38,10 @@
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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- "# Setup <a id='setup'></a>"
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+ "# Setup <a id='setup'></a>\n",
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+ "## Requirements\n",
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+ "* This notebook works with Python 2.7. The required modules are listed in `requirements.txt` within the gin repository **network_validation**.\n",
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+ "* *git-annex* is needed to load the experimental data from the gin repository **multielectrode_grasp**."
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]
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},
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{
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@@ -114,20 +117,20 @@
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],
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"source": [
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"# Clone repository (this will not download large data files)\n",
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- "!gin get doi/multielectrode_grasp\n",
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+ "!git clone git@gin.g-node.org:/doi/multielectrode_grasp\n",
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"\n",
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"# download large data files needed for this example\n",
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"os.chdir('./multielectrode_grasp')\n",
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- "!gin get-content ./datasets/l101210-001.odml # metadata for monkey L\n",
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- "!gin get-content ./datasets/l101210-001.ns2 # analog signals for monkey L\n",
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- "!gin get-content ./datasets/l101210-001.ccf\n",
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- "!gin get-content ./datasets/l101210-001.nev # unsorted spike times for monkey L\n",
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- "!gin get-content ./datasets/l101210-001-02.nev # sorted spike times for monkey L\n",
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- "!gin get-content ./datasets/i140703-001.odml # metadata for monkey I\n",
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- "!gin get-content ./datasets/i140703-001.ns2 # analog signals monkey I\n",
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- "!gin get-content ./datasets/i140703-001.ccf\n",
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- "!gin get-content ./datasets/i140703-001.nev # unsorted spike times for monkey I\n",
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- "!gin get-content ./datasets/i140703-001-03.nev # sorted spike times for monkey I\n",
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+ "!git-annex get-content ./datasets/l101210-001.odml # metadata for monkey L\n",
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+ "!git-annex get-content ./datasets/l101210-001.ns2 # analog signals for monkey L\n",
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+ "!git-annex get-content ./datasets/l101210-001.ccf\n",
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+ "!git-annex get-content ./datasets/l101210-001.nev # unsorted spike times for monkey L\n",
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+ "!git-annex get-content ./datasets/l101210-001-02.nev # sorted spike times for monkey L\n",
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+ "!git-annex get-content ./datasets/i140703-001.odml # metadata for monkey I\n",
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+ "!git-annex get-content ./datasets/i140703-001.ns2 # analog signals monkey I\n",
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+ "!git-annex get-content ./datasets/i140703-001.ccf\n",
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+ "!git-annex get-content ./datasets/i140703-001.nev # unsorted spike times for monkey I\n",
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+ "!git-annex get-content ./datasets/i140703-001-03.nev # sorted spike times for monkey I\n",
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"os.chdir('..')\n",
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"\n",
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"# add to path\n",
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