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@@ -49,8 +49,8 @@
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"text": [
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" % Total % Received % Xferd Average Speed Time Time Time Current\n",
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" Dload Upload Total Spent Left Speed\n",
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- "100 369 100 369 0 0 891 0 --:--:-- --:--:-- --:--:-- 891\n",
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- "100 289k 0 289k 0 0 159k 0 --:--:-- 0:00:01 --:--:-- 1452k\n"
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+ "100 369 100 369 0 0 6049 0 --:--:-- --:--:-- --:--:-- 6049\n",
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+ "100 289k 0 289k 0 0 232k 0 --:--:-- 0:00:01 --:--:-- 294k\n"
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]
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}
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],
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@@ -76,9 +76,9 @@
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"name": "stderr",
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"output_type": "stream",
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"text": [
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- "/home/kern/miniconda3/envs/elephant/lib/python3.9/site-packages/neo/io/hdf5io.py:63: FutureWarning: NeoHdf5IO will be removed in the next release of Neo. If you still have data in this format, we recommend saving it using NixIO which is also based on HDF5.\n",
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+ "/home/kern/miniconda3/envs/elephant_nixio/lib/python3.9/site-packages/neo/io/hdf5io.py:63: FutureWarning: NeoHdf5IO will be removed in the next release of Neo. If you still have data in this format, we recommend saving it using NixIO which is also based on HDF5.\n",
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" warn(warning_msg, FutureWarning)\n",
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- "/home/kern/miniconda3/envs/elephant/lib/python3.9/site-packages/numpy/core/shape_base.py:121: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.\n",
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+ "/home/kern/miniconda3/envs/elephant_nixio/lib/python3.9/site-packages/numpy/core/shape_base.py:121: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.\n",
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" ary = asanyarray(ary)\n"
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]
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}
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@@ -117,7 +117,7 @@
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},
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{
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"cell_type": "code",
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- "execution_count": 12,
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+ "execution_count": 5,
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"id": "2a06477e",
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"metadata": {},
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"outputs": [],
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@@ -126,13 +126,34 @@
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"with neo.io.NixIO(filename, 'ow') as io:\n",
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" io.write_block(blk)"
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]
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+ },
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+ {
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+ "cell_type": "code",
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+ "execution_count": 6,
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+ "id": "3502e50c-919e-49f8-b38c-629978d1d246",
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+ "metadata": {},
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+ "outputs": [
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+ {
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+ "name": "stdout",
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+ "output_type": "stream",
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+ "text": [
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+ "total 2,0M\n",
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+ "-rw-rw-r-- 1 kern kern 4,7K Dez 13 15:48 conversion_hd5_to_nix.ipynb\n",
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+ "-rw-rw-r-- 1 kern kern 289K Dez 13 15:53 dataset-1.h5\n",
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+ "-rw-rw-r-- 1 kern kern 1,7M Dez 13 15:53 dataset-1.nix\n"
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+ ]
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+ }
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+ ],
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+ "source": [
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+ "!ls -lh "
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+ ]
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}
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],
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"metadata": {
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"kernelspec": {
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- "display_name": "elephant_old",
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+ "display_name": "elephant_nixio",
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"language": "python",
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- "name": "elephant_old"
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+ "name": "elephant_nixio"
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},
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"language_info": {
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"codemirror_mode": {
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@@ -144,7 +165,7 @@
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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- "version": "3.9.6"
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+ "version": "3.9.7"
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}
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},
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"nbformat": 4,
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