ThalamicNetworkStates_Code

Hasegawa, Huang, Paricio-Montesinos, Gründemann Code Repository

This code can be used to generate main and supplementary figures of Hasegawa, Huang, Paricio-Montesinos & Gründemann. Supplementary figures S7-S18 can be generated with the code from the main figures (see annotations).

Fig1-2 and Fig S1-6 Data can be directly loaded by load('...\Code\Fig**.mat') in the respective code.m folder

Fig3-4, SVM_decoding After downloading Data files (.mat) from data repository, Data can be loaded by load('...\Data\Fig3_FigS7-18**.mat')

Load helper functions by running addpath(genpath('...\auxillary'));

Data structure: DataAll.(Aud1): Initial auditory-go group DataAll.(Vis1): Initial visual-go group E.g. DataAll.('Aud1')(n).BHV.Naive{m}.FieldName n: n-th mouse m: m-th session

FieldName: StimStart: Stimulus start time (s) ICF: raw calcium trace (sample,cell) LickPulse: Lick time (s) Trial_Freq: Auditory stimulus frequency Trial_Grat: Visual stimulus angle RotaryEncPulse: Rotary encoder pulse (no direction)