2024_Hasegawa_Huang_et_al_CODE/README.md

Code repository for Hasegawa & Huang et al.

This code can be used to generate main and supplementary figures of Hasegawa, Huang, Paricio-Montesinos & Gründemann (original preprint https://doi.org/10.1101/2023.08.23.554119).

Data can be downloaded from the data repository https://gin.g-node.org/GrundemannLab/2024_Hasegawa_Huang_et_al_DATA.

Code can be executed in MATLAB2020a (MathWorks).

Fig1-2 and Fig S1, 3, 4, 6
Load data by load('...\Fig*\*.mat').

Fig3-4, SVM_decoding
Laod data by load('...\Data\Fig3_FigS7-18\*\*.mat').

Supplementary figures S7-S18
Figures can be generated with the code from the main figures (see annotations).

Load helper functions by running addpath(genpath('...\auxillary'));

Data structure:
'DataAll.(Aud1)': Initial auditory-go group
'DataAll.(Vis1)': Initial visual-go group
E.g. DataAll.('Aud1')(n).BHV.Naive{m}.FieldName (n: n-th mouse; m: m-th session)

FieldName
StimStart: Stimulus start time (s)
ICF: raw calcium trace (sample,cell)
LickPulse: Lick time (s)
Trial_Freq: Auditory stimulus frequency
Trial_Grat: Visual stimulus angle
RotaryEncPulse: Rotary encoder pulse (no direction)