cell.xml 3.8 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125
  1. <?xml version="1.0" encoding="UTF-8"?>
  2. <?xml-stylesheet type="text/xsl" href="odmlTerms.xsl" xmlns:odml="http://www.g-node.org/odml"?>
  3. <odML version="1.1">
  4. <repository>http://portal.g-node.org/odml/terminologies/v1.1/terminologies.xml</repository>
  5. <version>1.0</version>
  6. <date>2011-01-21</date>
  7. <!-- ********************************************************* -->
  8. <!-- Cell section -->
  9. <!-- ********************************************************* -->
  10. <section>
  11. <type>cell</type>
  12. <name>Cell</name>
  13. <definition>Specification of the recorded cell. A cell definition should be a subsection of the
  14. <a href="../subject/subject.xml">Subject</a>
  15. section.
  16. </definition>
  17. <property>
  18. <name>Type</name>
  19. <definition>The type of the recorded cell. E.g. pyramidal cell.</definition>
  20. <type>string</type>
  21. </property>
  22. <property>
  23. <name>BrainRegion</name>
  24. <definition>The region the cell is located in. For example Retina, Cortex, Cerebellum etc.</definition>
  25. <type>string</type>
  26. </property>
  27. <property>
  28. <name>BrainSubRegion</name>
  29. <definition>More detailed specification of the region the cell is located in. For example, if BrainRegion is
  30. "hippocampus", then the BrainSubRegion may be "CA1".
  31. </definition>
  32. <type>string</type>
  33. </property>
  34. <property>
  35. <name>Layer</name>
  36. <definition>The name of the layer. For example, layer 4 in CA1.</definition>
  37. <type>string</type>
  38. </property>
  39. <property>
  40. <name>Ganglion</name>
  41. <definition>Like the pro-, meta- and mesothoracal ganglion in invertebrates.</definition>
  42. <type>string</type>
  43. </property>
  44. <property>
  45. <name>Structure</name>
  46. <definition>The structure of the organism the cell is located in e.g. Eye, Spinal cord...</definition>
  47. <type>string</type>
  48. </property>
  49. <property>
  50. <name>RecordingLocation</name>
  51. <definition>The recording location in the cell. E.g. axonal, dendritic, somatic, ...</definition>
  52. <type>string</type>
  53. </property>
  54. <property>
  55. <name>Identification</name>
  56. <definition>How was the cell identified?</definition>
  57. <type>string</type>
  58. </property>
  59. <property>
  60. <name>RestingPotential</name>
  61. <definition>What is the cells resting potential of the cell. An indicator for the recording quality.</definition>
  62. <type>float</type>
  63. <unit>mV</unit>
  64. </property>
  65. <property>
  66. <name>BaselineRate</name>
  67. <definition>For spiking cells, the spontaneous activity which might be an indicator for the cell's health status
  68. and thus recording quality.
  69. </definition>
  70. <type>float</type>
  71. <unit>Hz</unit>
  72. </property>
  73. <property>
  74. <name>BaselineNoise</name>
  75. <definition>The standard deviation of the baseline membrane potential.</definition>
  76. <type>float</type>
  77. </property>
  78. <property>
  79. <name>Rheobase</name>
  80. <definition>The minimum current required to make the cell fire action potentials.</definition>
  81. <type>float</type>
  82. <unit>nA</unit>
  83. </property>
  84. <property>
  85. <name>MembraneCapacity</name>
  86. <definition>The capacity of the cell.</definition>
  87. <type>float</type>
  88. <unit>pF</unit>
  89. </property>
  90. <property>
  91. <name>InputResistance</name>
  92. <definition>The input resistance of the recorded cell.</definition>
  93. <type>float</type>
  94. <unit>MOhm</unit>
  95. </property>
  96. <property>
  97. <name>TimeConstant</name>
  98. <definition>The membrane time-constant.</definition>
  99. <type>float</type>
  100. <unit>ms</unit>
  101. </property>
  102. <property>
  103. <name>Comment</name>
  104. <definition>A comment on the cell.</definition>
  105. <type>text</type>
  106. </property>
  107. </section>
  108. </odML>