G-Node
/
odml-terminologies
mirror of https://github.com/G-Node/odml-terminologies


			
			
				
					
						
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                xmlns:odml="http://www.g-node.org/odml">
  <!-- ************************************************  -->
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  <xsl:template match="odML">
    <html>
      <head>
        <meta charset="utf-8" />
        <title>odML | Open metadata markup language - Templates and Terminologies -</title>
        <meta name="description"
              content="Templates and Terminologies for the storage of scientific metadata" />
        <link rel="stylesheet" href="https://terminologies.g-node.org/_resources/odml_style.css" />
        <link rel="icon" href="https://terminologies.g-node.org/images/odMLIcon.png" />
      </head>

      <body>
        <header>
          <h1>odML Terminologies</h1>
          <p>Data model for storing arbitrary metadata</p>
        </header>

        <div class="wrapper">
          <sec>
            <p><a href="https://terminologies.g-node.org/index.html">
              <img src="https://terminologies.g-node.org/images/odMLTitle.png"
                   title="Terminologies home" />
            </a></p>
            <h1>odML - Terminologies</h1>
            <p>This repository contains Terminologies; odML facilitates and encourages
               standardization of scientific metadata by providing such terminologies.
               An odML-file can be based on such a terminology.
               In that case one does not need to provide definitions since they are part of
               the linked terminology. This page hosts all currently available odML
               Terminology files.</p>

            <p>
              A general introduction to odML and its usage can be found at the
              <a href="http://www.g-node.org/odml" rel="nofollow">main odML page</a>.
               A brief introduction can be found at the bottom of the page.</p>

            <p>If you would like to contribute and provide additions to the terminology
               collection to be shared with and used by the community, please open an
               issue or even create a Pull Request with your terminology on the
               corresponding <a href="https://github.com/G-Node/odml-terminologies" rel="nofollow">
                github repository</a>.</p>

            <h1>Terminology collection</h1>
            <ol>
              <xsl:if test="section">
                <xsl:for-each select="section">
                  <xsl:call-template name="sectionTerminology"/>
                </xsl:for-each>
              </xsl:if>
            </ol>

            <h2>A brief introduction to odML and metadata</h2>
            <p>odML (open metadata Markup Language) is a framework, proposed by
            <a href="http://journal.frontiersin.org/article/10.3389/fninf.2011.00016/full"
               rel="nofollow">Grewe et al. (2011)</a>,
              to organize and store experimental metadata in a human- and machine-readable,
              XML based format (odml). In this tutorial we will illustrate the conceptual
              design of the odML framework and show hands-on how you can generate your own
              odML metadata file collection. A well organized metadata management of your
              experiment is a key component to guarantee the reproducibility of your research
              and facilitate the provenance tracking of your analysis projects.</p>

            <h3>What are metadata and why are they needed?</h3>
            <p>Metadata are data about data. They describe the conditions under which the
            actual raw-data of an experimental study were acquired. The organization of
            such metadata and their accessibility may sound like a trivial task, and
            most laboratories developed their home-made solutions to keep track of
            their metadata. Most of these solutions, however, break down if data and
            metadata need to be shared within a collaboration, because implicit
            knowledge of what is important and how it is organized is often
            underestimated.</p>
            <p>While maintaining the relation to the actual raw-data, odML can help to
            collect all metadata which are usually distributed over several files and
            formats, and to store them unitedly which facilitates sharing data and
            metadata.</p>

            <h3>Key features of odML</h3>
            <ul>
              <li>open, XML based language, to collect, store and share metadata</li>
              <li>Machine- and human-readable</li>
              <li>Python-odML library</li>
              <li>Interactive odML-Editor</li>
            </ul>
          </sec>
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  <!-- ************************************************  -->
  <!--              section terminology.                 -->
  <xsl:template name="sectionTerminology" match="section">
    <!--create the list item -->
    <xsl:variable name="linkurl" select="include"/>
    <li>
      <a  href="{$linkurl}"><xsl:value-of select="concat(type,' - type, name: ',name)"/></a>
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