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@@ -1,61 +1,61 @@
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<?xml version="1.0" encoding="UTF-8"?>
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-<?xml-stylesheet type="text/xsl" href="odmlRepository.xsl" xmlns:odml="http://www.g-node.org/odml"?>
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+<?xml-stylesheet type="text/xsl" href="https://terminologies.g-node.org/_resources/odmlTerminologiesIndex.xsl" xmlns:odml="http://www.g-node.org/odml"?>
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<odML version="1.1">
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<section>
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<type>DataReference</type>
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<name>DataCite</name>
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<definition>A published dataset referenced by a DOI and registered with DataCite. The referenced dataset will contain either the odML file itself or the data the odML is annotating.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/datareference/datacite.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/datareference/datacite.xml</include>
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</section>
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<section>
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<type>DataReference</type>
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<name>DataDOI</name>
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<definition>A published dataset referenced by a DOI. The referenced dataset will contain either the odML file itself or the data the odML is annotating.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/datareference/datadoi.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/datareference/datadoi.xml</include>
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</section>
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<section>
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<type>DataReference</type>
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<name>DataURI</name>
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<definition>A published dataset referenced by a URI. The referenced dataset will contain either the odML file itself or the data the odML is annotating.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/datareference/datauri.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/datareference/datauri.xml</include>
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</section>
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<section>
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<type>DataReference</type>
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<name>DataURL</name>
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<definition>A published dataset referenced by a URL. The referenced dataset will contain either the odML file itself or the data the odML is annotating.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/datareference/dataurl.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/datareference/dataurl.xml</include>
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</section>
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<section>
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<type>DataReference</type>
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<name>DataReferenceDescription</name>
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<definition>Description of a data reference. This Section is defined to be used as a subsection of the 'DataReference' type sections.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/datareference/referencedescription.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/datareference/referencedescription.xml</include>
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</section>
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<section>
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<type>analysis</type>
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<name>Analysis</name>
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<definition>Sections of the Analysis type can be used to describe analyses.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/analysis/analysis.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/analysis/analysis.xml</include>
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</section>
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<section>
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<type>analysis/psth</type>
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<name>PSTH</name>
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<definition>An Analysis-type section to describe a PSTH.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/analysis/psth.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/analysis/psth.xml</include>
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</section>
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<section>
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<type>analysis/power_spectrum</type>
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<name>PowerSpectrum</name>
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<definition>Properties of this section define the way a power spectrum was calculated.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/analysis/power_spectrum.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/analysis/power_spectrum.xml</include>
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</section>
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<section>
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@@ -65,7 +65,7 @@
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<a href="../subject/subject.xml">Subject</a>
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section.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/cell/cell.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/cell/cell.xml</include>
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</section>
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<section>
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@@ -75,21 +75,21 @@
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to different Experiments. Related sections that can be used as subsections, parent sections, or siblings are
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Stimulus, HardwareSettings, and Experiment.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/dataset/dataset.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/dataset/dataset.xml</include>
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</section>
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<section>
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<type>blackrock</type>
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<name>Blackrock</name>
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<definition>Information on the Cerebus^TM data acquisition system</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/blackrock/blackrock.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/blackrock/blackrock.xml</include>
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</section>
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<section>
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<type>electrode</type>
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<name>Electrode</name>
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<definition>Properties to describe an electrode.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/electrode/electrode.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/electrode/electrode.xml</include>
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</section>
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<section>
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@@ -97,7 +97,7 @@
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<name>Event</name>
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<definition>Section for short annotations that are taken during an experiment to describe certain events.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/event/event.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/event/event.xml</include>
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</section>
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<section>
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@@ -106,7 +106,7 @@
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<definition>Section for grouping short annotations that are taken during
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an experiment, preparation etc...
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/collection/event_list.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/collection/event_list.xml</include>
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</section>
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<section>
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@@ -115,21 +115,21 @@
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<definition>Specification of an experiment. The Experiment is part of a Project and the recorded data for a specific
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Experiment are found in Datasets. Possible subsections are, for example, Dataset and Stimulus.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/experiment/experiment.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/experiment/experiment.xml</include>
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</section>
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<section>
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<type>experiment/behavior</type>
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<name>Behavior</name>
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<definition>Properties for describing an behavioural experiment.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/experiment/behavior.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/experiment/behavior.xml</include>
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</section>
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<section>
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<type>experiment/electrophysiology</type>
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<name>Electrophysiology</name>
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<definition>Properties for describing an electrophysiological experiment.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/experiment/electrophysiology.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/experiment/electrophysiology.xml</include>
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</section>
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<section>
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@@ -137,20 +137,20 @@
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<name>Imaging</name>
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<definition>Properties for describing an imaging experiment ranging from conventional light microscpoy to fMRI.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/experiment/imaging.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/experiment/imaging.xml</include>
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</section>
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<section>
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<type>experiment/pschophysics</type>
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<name>Psychophysics</name>
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<definition>Properties for describing an psychophysical experiment.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/experiment/psychophysics.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/experiment/psychophysics.xml</include>
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</section>
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<section>
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<type>hardware_properties</type>
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<name>HardwareProperties</name>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/collection/hardware_properties.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/collection/hardware_properties.xml</include>
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</section>
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<section>
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@@ -169,7 +169,7 @@
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class of the device like data-acquisition, amplifier, etc. Some
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properties are common for any type.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/collection/hardware_settings.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/collection/hardware_settings.xml</include>
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</section>
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<section>
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@@ -189,7 +189,7 @@
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amplifier, etc. Some properties are common for any
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type.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/hardware.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/hardware.xml</include>
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</section>
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<section>
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@@ -197,7 +197,7 @@
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<name>Amplifier</name>
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<definition>The amplifier section defines elements that can be used to describe amplifier properties and settings.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/amplifier.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/amplifier.xml</include>
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</section>
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<section>
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@@ -207,14 +207,14 @@
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number should be given after the property name like DAQ. AISampleRate0 for the sampling rate of the analog
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input channel 0.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/attenuator.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/attenuator.xml</include>
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</section>
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<section>
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<type>hardware/camera_objective</type>
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<name>CameraObjective</name>
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<definition>This section contains properties that describe a camera objective.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/attenuator.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/attenuator.xml</include>
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</section>
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<section>
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@@ -223,140 +223,140 @@
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<definition>The hardware section describes the settings of the used hardware. There should be one hardware section
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for each hardware item that was used.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/daq.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/daq.xml</include>
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</section>
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<section>
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<type>hardware/eyetracker</type>
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<name>Eyetracker</name>
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<definition>Properties of an eyetracker.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/eyetracker.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/eyetracker.xml</include>
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</section>
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<section>
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<type>hardware/filter</type>
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<name>Filter</name>
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<definition>Properties a filter modul for analog signal conditioning.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/filter.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/filter.xml</include>
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</section>
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<section>
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<type>hardware/filter_set</type>
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<name>Filterset</name>
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<definition>The FilterSet or also FilterCube used in a microscope.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/filter_set.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/filter_set.xml</include>
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</section>
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<section>
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<type>hardware/iaq</type>
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<name>ImageAcquisition</name>
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<definition>Properties to define an Image acquisition device. This can be a framegrabber, a camera etc.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/iaq.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/iaq.xml</include>
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</section>
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<section>
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<type>hardware/microscope</type>
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<name>Microscope</name>
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<definition>The Microscope section describes the properties of the used microscope.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/microscope.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/microscope.xml</include>
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</section>
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<section>
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<type>hardware/microscope_objective</type>
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<name>MicroscopeObjective</name>
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<definition>This section contains properties that describe the objective used in a microscope.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/microscope_objective.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/microscope_objective.xml</include>
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</section>
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<section>
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<type>hardware/scanner</type>
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<name>Scanner</name>
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<definition>The Scanner used to scan microscope images.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/scanner.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/scanner.xml</include>
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</section>
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<section>
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<type>hardware/stimulus_isolator</type>
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<name>StimulusIsolator</name>
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<definition>Properties of a stimulus Isolator device.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/hardware/stimulus_isolator.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/hardware/stimulus_isolator.xml</include>
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</section>
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<section>
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<type>model/lif</type>
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<name>Leaky integrate and fire</name>
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<definition>Section to describe a leaky integrate and fire neuron model.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/model/lif.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/model/lif.xml</include>
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</section>
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<section>
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<type>model/pif</type>
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<name>perfect integrate and fire</name>
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<definition>Section to describe a perfect integrate and fire model.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/model/pif.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/model/pif.xml</include>
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</section>
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<section>
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<type>model/multi_compartment</type>
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<name>Multi compartment model</name>
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<definition>Section to describe a biophysical model that consists of a number of compartments.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/model/multi_compartment.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/model/multi_compartment.xml</include>
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</section>
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<section>
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<type>model/single_compartment</type>
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<name>One compartment model</name>
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<definition>Section to describe a biophysical model that consists of a single compartment.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/model/single_compartment.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/model/single_compartment.xml</include>
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</section>
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<section>
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<type>license</type>
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<name>License</name>
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<definition>This section contains keywords to a data or software license.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/license/license.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/license/license.xml</include>
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</section>
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<section>
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<type>questionnaire/questionnaire</type>
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<name>Questionnaire</name>
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<definition>Description of a questionnaire.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/questionnaire/questionnaire.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/questionnaire/questionnaire.xml</include>
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</section>
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<section>
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<type>questionnaire/question</type>
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<name>Question</name>
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<definition>Description of a question if a questionnaire.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/questionnaire/question.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/questionnaire/question.xml</include>
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</section>
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<section>
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<type>person</type>
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<name>Person</name>
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<definition>Information about a person. E.g. as Experimenter, Author, etc.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/person/person.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/person/person.xml</include>
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</section>
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<section>
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<type>preparation</type>
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<name>Preparation</name>
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<definition>Description of the preparation procedure.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/preparation/preparation.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/preparation/preparation.xml</include>
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</section>
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<section>
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<type>project</type>
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<name>Project</name>
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<definition>Information about the project.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/project/project.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/project/project.xml</include>
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</section>
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<section>
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<type>protocol</type>
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<name>protocol</name>
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<definition>Information about the experimental protocol.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/protocol/protocol.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/protocol/protocol.xml</include>
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</section>
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<section>
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@@ -365,14 +365,14 @@
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<definition>During a recording session in a Setup Datasets are obtained from Cells and/or a Subject by using various
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stimuli (Stimulus section).
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/recording/recording.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/recording/recording.xml</include>
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</section>
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<section>
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<type>response</type>
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<name>Response</name>
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<definition>General description of an received response (on stimulus).</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/response/response.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/response/response.xml</include>
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</section>
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<section>
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@@ -381,7 +381,7 @@
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<definition>The experimental setup used in the recordings. By using HardwareProperties as a subsection, a very
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detailed description of the setup can be given.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/setup/setup.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/setup/setup.xml</include>
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</section>
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<section>
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@@ -390,7 +390,7 @@
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<definition>General description of an applied stimulus. This section is basis of various related sections that
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specify more specific stimuli.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/stimulus.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/stimulus.xml</include>
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</section>
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<section>
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@@ -399,20 +399,20 @@
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<definition>Property definitions to describe a DC stimulus meaning a constant stimulus e.g. a constant illumination,
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current etc.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/dc.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/dc.xml</include>
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</section>
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<section>
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<type>stimulus/gabor</type>
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<name>Gabor</name>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/gabor.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/gabor.xml</include>
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</section>
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<section>
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<type>stimulus/grating</type>
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<name>Grating</name>
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<definition>Property definitions to describe Gabor stimuli.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/grating.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/grating.xml</include>
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</section>
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<section>
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|
@@ -420,14 +420,14 @@
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<name>Pulse</name>
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<definition>Properties to describe a simple pulse stimulus that starts from and returns to a certain baseline.
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</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/pulse.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/pulse.xml</include>
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</section>
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<section>
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<type>stimulus/movie</type>
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<name>Movie</name>
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<definition>Properties to describe a movie (or image sequence) stimulus.</definition>
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- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/movie.xml</include>
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/movie.xml</include>
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</section>
|
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|
<section>
|
|
@@ -436,27 +436,27 @@
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|
<definition>A ramp stimulus may either linearly increase or decrease in amplitude. Starting from a certain start
|
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|
amplitude and reaching with a certain slope the destination amplitude.
|
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</definition>
|
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|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/ramp.xml</include>
|
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+ <include>https://terminologies.g-node.org/v1.1/stimulus/ramp.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
|
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<type>stimulus/random_dot</type>
|
|
|
<name>RandomDot</name>
|
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|
<definition>Properties to describe a random dot stimulus.</definition>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/random_dot.xml</include>
|
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|
+ <include>https://terminologies.g-node.org/v1.1/stimulus/random_dot.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
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|
<type>stimulus/sawtooth</type>
|
|
|
<name>Sawtooth</name>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/sawtooth.xml</include>
|
|
|
+ <include>https://terminologies.g-node.org/v1.1/stimulus/sawtooth.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
|
|
<type>stimulus/sine_wave</type>
|
|
|
<name>Sinewave</name>
|
|
|
<definition>Sawtooth Properties.</definition>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/sine_wave.xml</include>
|
|
|
+ <include>https://terminologies.g-node.org/v1.1/stimulus/sine_wave.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
|
@@ -465,14 +465,14 @@
|
|
|
<definition>A squarewave stimulus was presented. Squarewaves modulate with a certain frequency about the intensity
|
|
|
offset.
|
|
|
</definition>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/square_wave.xml</include>
|
|
|
+ <include>https://terminologies.g-node.org/v1.1/stimulus/square_wave.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
|
|
<type>stimulus/white_noise</type>
|
|
|
<name>Whitenoise</name>
|
|
|
<definition>Property definitions to describe a white noise stimulus.</definition>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/stimulus/white_noise.xml</include>
|
|
|
+ <include>https://terminologies.g-node.org/v1.1/stimulus/white_noise.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
|
@@ -481,7 +481,7 @@
|
|
|
<definition>The investigated experimental subject (animal or person).
|
|
|
May contain the Cell and Preparation sections as subsections.
|
|
|
</definition>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/subject/subject.xml</include>
|
|
|
+ <include>https://terminologies.g-node.org/v1.1/subject/subject.xml</include>
|
|
|
</section>
|
|
|
|
|
|
<section>
|
|
@@ -490,7 +490,7 @@
|
|
|
<definition>This is a convenience section that lists the terms of the CARMEN MINI (Gibson et al. Nature Precedings,
|
|
|
2009 Version 0.6) and maps them to the odml "standard" terminologies.
|
|
|
</definition>
|
|
|
- <include>http://portal.g-node.org/odml/terminologies/v1.1/carmenMini/carmen_mini.xml</include>
|
|
|
+ <include>https://terminologies.g-node.org/v1.1/carmenMini/carmen_mini.xml</include>
|
|
|
</section>
|
|
|
|
|
|
</odML>
|