ObjSim/src/spiketrain.hpp

#ifndef __SPIKETRAIN__HPP
#define __SPIKETRAIN__HPP

#include <vector>
#include "typedefs.hpp"
using namespace std;

/** SpikeTrain stores a spike train of a neuron layer and calculates statistical information
*/
class SpikeTrain
{
private:
	int** firings;
	int** firings_fromLayer;
	int** firings_loaded;
	int mN_firings;
	T_NNeurons mNNeurons;
	int* N_firings;				// the number of fired neurons 
    T_NNeurons* NNeurons;
	float dt;  // timestep in ms	
public:
	SpikeTrain():firings(0), firings_loaded(0), firings_fromLayer(0), N_firings(0) {};
	

	SpikeTrain(int** _firings, 
	           int* _N_firings, 
               T_NNeurons* _NNeurons,
	           const float & _dt);
	SpikeTrain(const char* filename, const float& dt=0.25);
	~SpikeTrain();
	void LoadSpikeFile(const char* filename);
	float MaxSpikeFreq(const int& NSpikes);
	void SpikeData(vector<double> * SpikeTimes, vector<double> * NeuronNumbers);
	void MeanSpikeRate(const double& WindowSize, vector<double>* timeScale, vector<double>* spikeRate);
	int nNeurons() {return *NNeurons;};
};


#endif // #ifndef __SPIKETRAIN__HPP