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@@ -7,3 +7,36 @@ Object Recognition"](https://doi.org/10.1152/jn.90651.2008),
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Frank Michler, Reinhard Eckhorn, and Thomas Wachtler (2009)
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- ["Adaptive Feedback Inhibition Improves Pattern Discrimination Learning"](https://doi.org/10.1007/11829898_3)
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Frank Michler, Thomas Wachtler, Reinhard Eckhorn (2006)
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+
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+## Compiling
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+
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+Running `build_all.sh` will compile:
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+
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+ - the simulation library `csim` (source code is in `src`)
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+ - simulation main programs:
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+ - `simulations/fm/som02/som02.cpp` which was used in [Frank Michler et al. (2009)](https://doi.org/10.1152/jn.90651.2008)
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+ - `minimal/minimal.cpp` is a minimal simulation program demonstrating how to use the library.
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+ - some unit tests in `mycxxtests` using the cxxtest library
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+
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+Binaries will be installed in `install`.
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+
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+## Running via command line
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+
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+You can run the simulations via:
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+
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+```
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+cd install/bin/som02
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+./som02
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+```
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+
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+settings_som02.cfg contains default simulation parameters that can be overwritten via command line arguments.
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+
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+## Running via Jupyter noteooks
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+
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+`start_jupyter.sh` starts jupyter notebook in subdirectory `python`.
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+The notebook `python/ipynb/run_objsim_with_gaussian_input.ipynb`
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+Before you must provide a shell script in `env/activate_python_env.sh` to setup your python environment.
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+You can use `env/activate_python_env_EXAMPLE.sh` as an example.
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+
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+`python/ipynb/calc_maps.ipynb` demonstrates how to load simulation data and calculate topographic maps.
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+
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