20210927-waxholm-v4/input/WHS_SD_rat_atlas_v4.label

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# ITK-SnAP Label Description File
# File format: 
# IDX   -R-  -G-  -B-  -A--  VIS MSH  LABEL
# Fields: 
#    IDX:   Zero-based index 
#    -R-:   Red color component (0..255)
#    -G-:   Green color component (0..255)
#    -B-:   Blue color component (0..255)
#    -A-:   Label transparency (0.00 .. 1.00)
#    VIS:   Label visibility (0 or 1)
#    IDX:   Label mesh visibility (0 or 1)
#  LABEL:   Label description 
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    0     0    0    0        0  0  0    "Clear Label"
    1   255   52   39        1  1  0    "corticofugal tract and corona radiata"
    3     0    0  255        1  1  0    "Subthalamic nucleus"
    4   255  255    1        1  1  0    "Molecular cell layer of the cerebellum"
    5     0  255  255        1  1  0    "Cerebellum, unspecified"
    6   255    0  255        1  1  0    "alveus of the hippocampus"
    7    52  255   13        1  1  0    "inferior cerebellar peduncle"
   10    29  104  235        1  1  0    "Cingulate area 2"
   32    26  231  255        1  1  0    "Entopeduncular nucleus"
   33     2   44  255        1  1  0    "Ventricular system, unspecified"
   34   212  255    0        1  1  0    "medial lemniscus, unspecified"
   35   255   25  240        1  1  0    "facial nerve, unspecified"
   36   124  252    0        1  1  0    "anterior commissure, anterior limb"
   37   255  186    0        1  1  0    "anterior commissure, posterior limb"
   38   174    0  232        1  1  0    "ventral hippocampal commissure"
   40   255    8    0        1  1  0    "Septal region"
   41    48  218    0        1  1  0    "optic nerve"
   42    38  126  255        1  1  0    "optic tract and optic chiasm"
   43   218  170   62        1  1  0    "Pineal gland"
   45   134  255   90        1  1  0    "Spinal cord"
   46    33  230  255        1  1  0    "commissure of the superior colliculus"
   47   153   83  255        1  1  0    "Brainstem, unspecified"
   48   226  120  161        1  1  0    "Hypothalamic region, unspecified"
   50    86    0  221        1  1  0    "Superficial gray layer of the superior colliculus"
   51     7  255   89        1  1  0    "Periaqueductal gray"
   52    21  192  255        1  1  0    "fornix"
   53   238  186    0        1  1  0    "mammillotegmental tract"
   54   173  255   47        1  1  0    "commissural stria terminalis"
   55   225  151   15        1  1  0    "Deeper layers of the superior colliculus"
   56   235   87  255        1  1  0    "Periventricular gray"
   57   250  244  247        1  1  0    "genu of the facial nerve"
   58     0  215   11        1  1  0    "Pontine nuclei"
   59     0  255   29        1  1  0    "fimbria of the hippocampus"
   60   244   67   69        1  1  0    "fasciculus retroflexus"
   61     0  255    0        1  1  0    "stria medullaris thalami"
   62   238  117   51        1  1  0    "stria terminalis"
   63   255    0  218        1  1  0    "posterior commissure"
   64    15  109  230        1  1  0    "Glomerular layer of the accessory olfactory bulb"
   65   255  227    0        1  1  0    "Glomerular layer of the olfactory bulb"
   66   255  135    0        1  1  0    "Olfactory bulb, unspecified"
   67   255  110    0        1  1  0    "corpus callosum and associated subcortical white matter"
   68   188   32  173        1  1  0    "brachium of the superior colliculus"
   69   255   42   39        1  1  0    "inferior colliculus, commissure"
   70    39  244  253        1  1  0    "Central canal"
   71    63  192  255        1  1  0    "Interpeduncular nucleus"
   72   179   28   53        1  1  0    "ascending fibers of the facial nerve"
   73   255   79  206        1  1  0    "anterior commissure, intrabulbar part"
   74     0  246   14        1  1  0    "Inferior olive"
   75    91  241  255        1  1  0    "Spinal trigeminal nucleus"
   76   250  128  114        1  1  0    "spinal trigeminal tract"
   77   206  211    7        1  1  0    "Frontal association cortex"
   78   134  204   76        1  1  0    "middle cerebellar peduncle"
   79   128  170  255        1  1  0    "transverse fibers of the pons"
   80    69  235  202        1  1  0    "habenular commissure"
   81   222    7  237        1  1  0    "Nucleus of the stria medullaris"
   82   225  240   13        1  1  0    "Basal forebrain region, unspecified"
   83   250  170   64        1  1  0    "supraoptic decussation"
   84    65  150  255        1  1  0    "medial lemniscus decussation"
   85   114    9  212        1  1  0    "pyramidal decussation"
   93     0    8  182        1  1  0    "Bed nucleus of the stria terminalis"
   94   255   87   30        1  1  0    "Pretectal region"
   95   165  131  107        1  1  0    "Cornu ammonis 3"
   96    91   45   10        1  1  0    "Dentate gyrus"
   97   255  255    0        1  1  0    "Cornu ammonis 2"
   98   217  104   13        1  1  0    "Cornu ammonis 1"
   99   255    0    0        1  1  0    "Fasciola cinereum"
  100   255  192    0        1  1  0    "Subiculum"
  108    40  112  130        1  1  0    "Postrhinal cortex"
  109    80  123  175        1  1  0    "Presubiculum"
  110    23   54   96        1  1  0    "Parasubiculum"
  112   205   51  255        1  1  0    "Perirhinal area 35"
  113   112   48  160        1  1  0    "Perirhinal area 36"
  114   122  187   51        1  1  0    "Medial entorhinal cortex"
  115    90  111   47        1  1  0    "Lateral entorhinal cortex"
  119     0  144   55        1  1  0    "Vestibular apparatus"
  120     0  255   28        1  1  0    "Cochlea"
  121   253  148    0        1  1  0    "Cochlear nerve"
  122   253   50    0        1  1  0    "Vestibular nerve"
  123     0   12  255        1  1  0    "Ventral cochlear nucleus, granule cell layer"
  125    52   29  144        1  1  0    "4th ventricle"
  126    92  156  211        1  1  0    "Dorsal cochlear nucleus, molecular layer"
  127     0   80  156        1  1  0    "Dorsal cochlear nucleus, fusiform and granule layer"
  128   197  238  255        1  1  0    "Dorsal cochlear nucleus, deep core"
  129   255  217    0        1  1  0    "acoustic striae"
  130   213  255    0        1  1  0    "trapezoid body"
  131     0  255   81        1  1  0    "Nucleus of the trapezoid body"
  132     0  238  255        1  1  0    "Superior paraolivary nucleus"
  133   219  239   61        1  1  0    "Medial superior olive"
  134    35   76  190        1  1  0    "Lateral superior olive"
  135     1  153   21        1  1  0    "Superior periolivary region"
  136     0  174  255        1  1  0    "Ventral periolivary nuclei"
  137   255    0  115        1  1  0    "Lateral lemniscus, ventral nucleus"
  138   171   16   91        1  1  0    "Lateral lemniscus, intermediate nucleus"
  139   108   18   91        1  1  0    "Lateral lemniscus, dorsal nucleus"
  140   255   29    0        1  1  0    "lateral lemniscus, commissure"
  141   255  166    0        1  1  0    "lateral lemniscus, unspecified"
  142   206  255  142        1  1  0    "Inferior colliculus, dorsal cortex"
  143     0  238  254        1  1  0    "Inferior colliculus, central nucleus"
  145    48  136  203        1  1  0    "Inferior colliculus, external cortex"
  146   176   58   72        1  1  0    "inferior colliculus, brachium"
  150   255   47  242        1  1  0    "Medial geniculate body, marginal zone"
  151   255  215    0        1  1  0    "Primary auditory area"
  152   240  255  255        1  1  0    "Secondary auditory area, dorsal part"
  153   216  191  216        1  1  0    "Secondary auditory area, ventral part"
  157   244  156  255        1  1  0    "external medullary lamina, auditory radiation"
  158    34  152  255        1  1  0    "Ventral cochlear nucleus, anterior part"
  159     0  230  207        1  1  0    "Ventral cochlear nucleus, posterior part"
  160     0  255  106        1  1  0    "Ventral cochlear nucleus, cap area"
  162   185  255  233        1  1  0    "Spiral ganglion"
  163    99  205    0        1  1  0    "Nucleus sagulum"
  164   110    0  255        1  1  0    "Reticular (pre)thalamic nucleus, auditory segment"
  180   255    0  221        1  1  0    "lateral olfactory tract"
  181     0  204  255        1  1  0    "Piriform cortex, layer 1"
  182     0    0  254        1  1  0    "Piriform cortex, layer 2"
  183   165  120  221        1  1  0    "Piriform cortex, layer 3"
  184   230  216  250        1  1  0    "Nucleus accumbens, core"
  187    99  197   18        1  1  0    "Substantia nigra, reticular part"
  188   255  255  127        1  1  0    "Substantia nigra, compact part"
  189     0  159  159        1  1  0    "Substantia nigra, lateral part"
  192    88   47  108        1  1  0    "Nucleus accumbens, shell"
  193     0  162  255        1  1  0    "Ventral pallidum"
  195   255   85  255        1  1  0    "Globus pallidus external, medial part"
  196   127  255  212        1  1  0    "Ventral tegmental area"
  197   129   79  155        1  1  0    "Caudate putamen"
  198   200   25  200        1  1  0    "Globus pallidus external, lateral part"
  199   220   20   60        1  1  0    "Ventral striatal region, unspecified"
  200     0  217  255        1  1  0    "Reticular (pre)thalamic nucleus, unspecified"
  201   183  199  136        1  1  0    "Peripeduncular nucleus"
  204   255   25    0        1  1  0    "Pregeniculate nucleus"
  205   255  226    0        1  1  0    "Dorsal lateral geniculate nucleus"
  206   217  108    0        1  1  0    "Lateral habenular nucleus"
  207   205    0   24        1  1  0    "Medial habenular nucleus"
  208   228  112  214        1  1  0    "Posterior intralaminar nucleus"
  210   255  255  200        1  1  0    "Posterior thalamic nuclear group, triangular part"
  211   205    0    6        1  1  0    "Parataenial thalamic nucleus"
  213   131   10  121        1  1  0    "Anterodorsal thalamic nucleus"
  214   239  121  218        1  1  0    "Anteroventral thalamic nucleus, dorsomedial part"
  215   101   35  142        1  1  0    "Anteroventral thalamic nucleus, ventrolateral part"
  216     0  255   17        1  1  0    "Rhomboid thalamic nucleus"
  218    35  255  236        1  1  0    "Xiphoid thalamic nucleus"
  219   255  170    0        1  1  0    "Reuniens thalamic nucleus"
  221     0  185  126        1  1  0    "Ventromedial thalamic nucleus"
  222   130    0  217        1  1  0    "Submedius thalamic nucleus"
  223   139   93  139        1  1  0    "Angular thalamic nucleus"
  227   255    0  254        1  1  0    "Ventral posteromedial thalamic nucleus"
  228   255  123    0        1  1  0    "Laterodorsal thalamic nucleus, dorsomedial part"
  229    43  153   31        1  1  0    "Laterodorsal thalamic nucleus, ventrolateral part"
  230   255  255    2        1  1  0    "Posterior thalamic nucleus"
  231   170  170  255        1  1  0    "Ventrolateral thalamic nucleus"
  232   255   85  127        1  1  0    "Mediodorsal thalamic nucleus, lateral part"
  233    85  170    0        1  1  0    "Mediodorsal thalamic nucleus, central part"
  235   216  191  217        1  1  0    "Zona incerta, dorsal part"
  236    75  200  138        1  1  0    "Zona incerta, ventral part"
  238   194   71   79        1  1  0    "Zona incerta, A13 dopamine cells"
  239   219  143  247        1  1  0    "pretectothalamic lamina"
  240   170  255  255        1  1  0    "Mediodorsal thalamic nucleus, medial part"
  242   156   51   51        1  1  0    "Paraventricular thalamic nuclei (anterior and posterior)"
  246   240  248  255        1  1  0    "Paracentral thalamic nucleus"
  247   224  182   64        1  1  0    "Central medial thalamic nucleus"
  248   153   50  204        1  1  0    "Central lateral thalamic nucleus"
  249   170  255    0        1  1  0    "external medullary lamina, unspecified"
  254     0   85  255        1  1  0    "Anteromedial thalamic nucleus"
  255   248  117  222        1  1  0    "Interanteromedial thalamic nucleus"
  257    30  144  255        1  1  0    "Zona incerta, rostral part"
  260   160   82   45        1  1  0    "Intermediodorsal thalamic nucleus"
  266     0  255    8        1  1  0    "Ventral posterior nucleus of the thalamus, parvicellular part"
  267   255  239  213        1  1  0    "Parafascicular thalamic nucleus"
  268     0    0  205        1  1  0    "Retroreuniens thalamic nucleus"
  270   210  182  140        1  1  0    "superior cerebellar peduncle and prerubral field"
  272     0    0  128        1  1  0    "Intergeniculate leaflet"
  278   233  150  122        1  1  0    "Subparafascicular nucleus"
  280   255  250  250        1  1  0    "Fields of Forel"
  281   147  112  219        1  1  0    "Subgeniculate nucleus"
  282   131   50  128        1  1  0    "Ethmoid-Limitans nucleus"
  283   199   87   61        1  1  0    "Lateral posterior thalamic nucleus, lateral part"
  284   255  182  193        1  1  0    "Zona incerta, A11 dopamine cells"
  285    60  179  113        1  1  0    "Lateral posterior thalamic nucleus, mediorostral part"
  286   255  235  205        1  1  0    "Lateral posterior thalamic nucleus, mediocaudal part"
  287   255  228  196        1  1  0    "Zona incerta, caudal part"
  290   155  148  111        1  1  0    "intramedullary thalamic area"
  291   255   92   10        1  1  0    "internal medullary lamina"
  293   255  136    0        1  1  0    "Ventral anterior thalamic nucleus"
  294   171   86   62        1  1  0    "Ventral posterolateral thalamic nucleus"
  295   239  163    0        1  1  0    "Medial geniculate body, dorsal division"
  297    10  244  217        1  1  0    "Medial geniculate body, medial division"
  298   131   58   31        1  1  0    "Medial geniculate body, ventral division"
  299    10  244  150        1  1  0    "Medial geniculate body, suprageniculate nucleus"
  400   255    0    1        1  1  0    "Ventrolateral orbital area"
  401   255  174  201        1  1  0    "Lateral orbital area"
  402   200  191  231        1  1  0    "Ventral orbital area"
  403    63   72  204        1  1  0    "Medial orbital area"
  404   185  122   87        1  1  0    "Dorsolateral orbital area"
  405   163   73  164        1  1  0    "Prelimbic area"
  406     0  162  232        1  1  0    "Secondary motor area"
  407   136    0   21        1  1  0    "Frontal association area 3"
  408   153  217  234        1  1  0    "Primary motor area"
  409   255  201   14        1  1  0    "Agranular insular cortex, ventral area"
  410   255  127   39        1  1  0    "Agranular insular cortex dorsal area "
  411     0  128  128        1  1  0    "Cingulate area 1"
  412   153  217  200        1  1  0    "Claustrum"
  413    34  177   76        1  1  0    "Infralimbic area"
  414   255  242    0        1  1  0    "Dysgranular insular cortex"
  416   239  228  176        1  1  0    "Granular insular cortex"
  417   185   14  131        1  1  0    "Primary somatosensory area, forelimb representation"
  418   237   28   36        1  1  0    "Primary somatosensory area, dysgranular zone"
  420   255  128  192        1  1  0    "Primary somatosensory area, face representation"
  422   200  100  250        1  1  0    "Secondary somatosensory area"
  423   136  100   21        1  1  0    "Primary somatosensory area, hindlimb representation"
  424   181  230   29        1  1  0    "Agranular insular cortex, posterior area "
  425   120  177   76        1  1  0    "Primary somatosensory area, barrel field"
  427   200   73  164        1  1  0    "Retrosplenial dysgranular area"
  429   225  150  201        1  1  0    "Primary somatosensory area, trunk representation"
  430    25  100  200        1  1  0    "Retrosplenial granular area"
  432   255  240   29        1  1  0    "Parietal association cortex, lateral area"
  433   108    0  108        1  1  0    "Parietal association cortex, medial area"
  436   128    0   64        1  1  0    "Parietal association cortex, posterior area "
  442    84   52   35        1  1  0    "Primary visual area"
  443   255  100  100        1  1  0    "Secondary visual area, lateral part"
  444     0  128    0        1  1  0    "Temporal association cortex"
  448   128    0  100        1  1  0    "Secondary visual area, medial part"
  500     1   10  100        1  1  0    "Endopiriform nucleus"
  501     2   20  200        1  1  0    "Amygdaloid area, unspecified"
  502   230  184   67        1  1  0    "Nucleus of the lateral olfactory tract"